Protein-DNA binding sites prediction based on pre-trained protein language model and contrastive learning. - Yufan Liu; Boxue Tian (Briefings Bioinform., 2024)

DeepP450: Predicting Human P450 Activities of Small Molecules by Integrating Pretrained Protein Language Model and Molecular Representation. - Jiamin Chang; Xiaoyu Fan; Boxue Tian (J. Chem. Inf. Model., 2024)

Protein-small molecule binding site prediction based on a pre-trained protein language model with contrastive learning. - Jue Wang; Yufan Liu; Boxue Tian (J. Cheminformatics, 2024)

GLMCyp: A Deep Learning-Based Method for CYP450-Mediated Reaction Site Prediction. - Xuhai Huang; Jiamin Chang; Boxue Tian (J. Chem. Inf. Model., 2025)

SynthMol: A Drug Safety Prediction Framework Integrating Graph Attention and Molecular Descriptors into Pre-Trained Geometric Models. - Zidong Su; Rong Zhang; Xiaoyu Fan; Boxue Tian (J. Chem. Inf. Model., 2025)