PhaSepDB: a database of liquid-liquid phase separation related proteins. - Kaiqiang You; Qi Huang; Chunyu Yu; Boyan Shen; Cristoffer Sevilla; Minglei Shi; Henning Hermjakob; Yang Chen 053; Tingting Li (Nucleic Acids Res., 2020)

Proteome-scale analysis of phase-separated proteins in immunofluorescence images. - Chunyu Yu; Boyan Shen; Kaiqiang You; Qi Huang; Minglei Shi; Congying Wu; Yang Chen; Chaolin Zhang; Tingting Li (Briefings Bioinform., 2021)

Computational Screening of Phase-separating Proteins. - Boyan Shen; Zhaoming Chen; Chunyu Yu; Taoyu Chen; Minglei Shi; Tingting Li (Genom. Proteom. Bioinform., 2021)

A SysML-driven co-design platform applying an MBSE-PDM integration framework and cross-stage change propagation method. - Xishuang Jing; Boyan Shen; Jielin Yu; Chengyang Zhang; Fubao Xie; Siyu Chen; Gang Zhao (Comput. Ind. Eng., 2025)