Logical transformation of genome-scale metabolic models for gene level applications and analysis. - Cheng Zhang 002; Boyang Ji; Adil Mardinoglu; Jens Nielsen; Qiang Hua (Bioinform., 2015)

Reconstruction and analysis of a Kluyveromyces marxianus genome-scale metabolic model. - Simonas Marcisauskas; Boyang Ji; Jens Nielsen (BMC Bioinform., 2019)

Performance of regression models as a function of experiment noise. - Gang Li; Jan Zrimec; Boyang Ji; Jun Geng; Johan Larsbrink; Aleksej Zelezniak; Jens Nielsen; Martin K. M. Engqvist (CoRR, 2019)

Microbial community dynamics revisited. - Boyang Ji; Markus J. Herrgård; Jens Nielsen (Nat. Comput. Sci., 2021)