Deep Learning Based Tumor Type Classification Using Gene Expression Data. - Boyu Lyu; Anamul Haque (BCB, 2018)

SynQuant: an automatic tool to quantify synapses from microscopy images. - Yizhi Wang; Congchao Wang; Petter Ranefall; Gerard Broussard; Yinxue Wang; Guilai Shi; Boyu Lyu; Chiung-Ting Wu; Yue Wang 021; Lin Tian; Guoqiang Yu (Bioinform., 2020)

ConvexVST: A Convex Optimization Approach to Variance-stabilizing Transformation. - Mengfan Wang; Boyu Lyu; Guoqiang Yu (ICML, 2021)

NIS3D: A Completely Annotated Benchmark for Dense 3D Nuclei Image Segmentation. - Wei Zheng; James Cheng Peng; Zeyuan Hou; Boyu Lyu; Mengfan Wang; Xuelong Mi; Shuoxuan Qiao; Yinan Wan; Guoqiang Yu (NeurIPS, 2023)

Princut-Auto: An Unsupervised 3D Cell Detection Tool for Embryonic Data. - Wei Zheng; Boyu Lyu; Xuelong Mi; James Cheng Peng; Yizhi Wang; Mengfan Wang; Zuolin Cheng; Shuoxuan Qiao; Zeyuan Hou; Guoqiang Yu (ISBI, 2024)