Poster: study of protein-ligand binding geometries using a scalable and accurate octree-based algorithm in mapReduce. - Trilce Estrada; Boyu Zhang 002; Pietro Cicotti; Roger S. Armen; Michela Taufer (SC Companion, 2011)

Secondary structure predictions for long RNA sequences based on inversion excursions: preliminary results. - Daniel T. Yehdego; Boyu Zhang 002; Michela Taufer; Vikram Kumar Reddy Kodimala; Rahulsimham Vegesna; Sameera Viswakula; Kyle L. Johnson; Ming-Ying Leung (BCB, 2012)

A modularized MapReduce framework to support RNA secondary structure prediction and analysis workflows. - Boyu Zhang 002; Daniel T. Yehdego; Kyle L. Johnson; Ming-Ying Leung; Michela Taufer (BIBM Workshops, 2012)

Reengineering High-throughput Molecular Datasets for Scalable Clustering Using MapReduce. - Trilce Estrada; Boyu Zhang 002; Michela Taufer; Pietro Cicotti; Roger S. Armen (HPCC-ICESS, 2012)

A scalable and accurate method for classifying protein-ligand binding geometries using a MapReduce approach. - Trilce Estrada; Boyu Zhang 002; Pietro Cicotti; Roger S. Armen; Michela Taufer (Comput. Biol. Medicine, 2012)

On Efficiently Capturing Scientific Properties in Distributed Big Data without Moving the Data: A Case Study in Distributed Structural Biology Using MapReduce. - Boyu Zhang 002; Trilce Estrada; Pietro Cicotti; Michela Taufer (CSE, 2013)

Secondary Structure Predictions for Long RNA Sequences Based on Inversion Excursions and MapReduce. - Daniel T. Yehdego; Boyu Zhang 002; Vikram Kumar Reddy Kodimala; Kyle L. Johnson; Michela Taufer; Ming-Ying Leung (IPDPS Workshops, 2013)

Enabling In-Situ Data Analysis for Large Protein-Folding Trajectory Datasets. - Boyu Zhang 002; Trilce Estrada; Pietro Cicotti; Michela Taufer (IPDPS, 2014)

Bandwidth Modeling in Large Distributed Systems for Big Data Applications. - Bahman Javadi; Boyu Zhang 002; Michela Taufer (PDCAT, 2014)

Accurate Scoring of Drug Conformations at the Extreme Scale. - Boyu Zhang 002; Trilce Estrada; Pietro Cicotti; Pavan Balaji; Michela Taufer (CCGRID, 2015)

It-Situ Data Analysis of Protein Folding Trajectories. - Travis Johnston; Boyu Zhang 002; Adam Liwo; Silvia Crivelli; Michela Taufer (CoRR, 2015)

Mimir: Memory-Efficient and Scalable MapReduce for Large Supercomputing Systems. - Tao Gao; Yanfei Guo; Boyu Zhang 002; Pietro Cicotti; Yutong Lu; Pavan Balaji; Michela Taufer (IPDPS, 2017)

In situ data analytics and indexing of protein trajectories. - Travis Johnston; Boyu Zhang 002; Adam Liwo; Silvia Crivelli; Michela Taufer (J. Comput. Chem., 2017)

Enabling scalable and accurate clustering of distributed ligand geometries on supercomputers. - Boyu Zhang 002; Trilce Estrada; Pietro Cicotti; Pavan Balaji; Michela Taufer (Parallel Comput., 2017)

On the Power of Combiner Optimizations in MapReduce Over MPI Workflows. - Tao Gao; Yanfei Guo; Boyu Zhang 002; Pietro Cicotti; Yutong Lu; Pavan Balaji; Michela Taufer (ICPADS, 2018)

Memory-Efficient and Skew-Tolerant MapReduce Over MPI for Supercomputing Systems. - Tao Gao; Yanfei Guo; Boyu Zhang 002; Pietro Cicotti; Yutong Lu; Pavan Balaji; Michela Taufer (IEEE Trans. Parallel Distributed Syst., 2020)