A comparative phylogenetic approach for dating whole genome duplication events. - Brad A. Chapman; John E. Bowers 002; Stefan R. Schulze; Andrew H. Paterson (Bioinform., 2004)

Biopython: freely available Python tools for computational molecular biology and bioinformatics. - Peter J. A. Cock; Tiago Rodrigues Antao; Jeffrey T. Chang; Brad A. Chapman; Cymon J. Cox; Andrew Dalke; Iddo Friedberg; Thomas Hamelryck; Frank Kauff; Bartek Wilczynski; Michiel J. L. de Hoon (Bioinform., 2009)

Galaxy CloudMan: delivering cloud compute clusters. - Enis Afgan; Dannon Baker; Nathan Coraor; Brad Chapman; Anton Nekrutenko; James Taylor 001 (BMC Bioinform., 2010)

CloudMan as a platform for tool, data, and analysis distribution. - Enis Afgan; Brad Chapman; James Taylor 001 (BMC Bioinform., 2012)

Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community. - Konstantinos Krampis; Tim Booth; Brad Chapman; Bela Tiwari; Mesude Bicak; Dawn Field; Karen E. Nelson (BMC Bioinform., 2012)

Bio.Phylo: A unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython. - Eric Talevich; Brandon M. Invergo; Peter J. A. Cock; Brad A. Chapman (BMC Bioinform., 2012)

The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons. - Shannan J. Ho Sui; Kimberly Begley; Dorothy Reilly; Brad Chapman; Ray McGovern; Philippe Rocca-Serra; Eamonn Maguire; Gabriel M. Altschuler; Terah A. A. Hansen; Ramakrishna Sompallae; Andrei Krivtsov; Ramesh A. Shivdasani; et al. (Nucleic Acids Res., 2012)

GEMINI: Integrative Exploration of Genetic Variation and Genome Annotations. - Umadevi Paila; Brad A. Chapman; Rory D. Kirchner; Aaron R. Quinlan (PLoS Comput. Biol., 2013)

Community-driven development for computational biology at Sprints, Hackathons and Codefests. - Steffen Möller; Enis Afgan; Michael Banck; Raoul Jean Pierre Bonnal; Timothy Booth; John Chilton; Peter J. A. Cock; Markus Gumbel; Nomi L. Harris; Richard C. G. Holland; Matús Kalas; László Kaján; et al. (BMC Bioinform., 2014)

The Bioinformatics Open Source Conference (BOSC) 2013. - Nomi L. Harris; Peter J. A. Cock; Brad A. Chapman; Jeremy Goecks; Hans-Rudolf Hotz; Hilmar Lapp (Bioinform., 2015)

The 2016 Bioinformatics Open Source Conference (BOSC). - Nomi L. Harris; Peter J. A. Cock; Brad Chapman; Christopher J. Fields; Karsten Hokamp; Hilmar Lapp; Monica C. Munoz-Torres; Heather Wiencko (F1000Research, 2016)

The 2015 Bioinformatics Open Source Conference (BOSC 2015). - Nomi L. Harris; Peter J. A. Cock; Hilmar Lapp; Brad Chapman; Rob Davey; Christopher J. Fields; Karsten Hokamp; Monica C. Munoz-Torres (PLoS Comput. Biol., 2016)

Hacking and Making at Time-Bounded Events: Current Trends and Next Steps in Research and Event Design. - Anna Filippova; Brad Chapman; R. Stuart Geiger; James D. Herbsleb; Arun Kalyanasundaram; Erik H. Trainer; Aurelia Moser; Arlin Stoltzfus (CSCW Companion, 2017)

Robust Cross-Platform Workflows: How Technical and Scientific Communities Collaborate to Develop, Test and Share Best Practices for Data Analysis. - Steffen Möller; Stuart W. Prescott; Lars Wirzenius; Petter Reinholdtsen; Brad Chapman; Pjotr Prins; Stian Soiland-Reyes; Fabian Klötzl; Andrea Bagnacani; Matús Kalas; Andreas Tille; Michael R. Crusoe (Data Sci. Eng., 2017)

The 2017 Bioinformatics Open Source Conference (BOSC). - Nomi L. Harris; Peter J. A. Cock; Brad Chapman; Christopher J. Fields; Karsten Hokamp; Hilmar Lapp; Monica C. Munoz-Torres; Bastian Greshake Tzovaras; Heather Wiencko (F1000Research, 2017)

bcbioRNASeq: R package for bcbio RNA-seq analysis. - Michael J. Steinbaugh; Lorena Pantano; Rory D. Kirchner; Víctor Barrera; Brad A. Chapman; Mary E. Piper; Meeta Mistry; Radhika S. Khetani; Kayleigh Rutherford; Oliver Hofmann 001; John N. Hutchinson; Shannan J. Ho Sui (F1000Research, 2017)

The 2nd Workshop on Hacking and Making at Time-Bounded Events: Current Trends and Next Steps in Research and Event Design. - Ei Pa Pa Pe-Than; James D. Herbsleb; Alexander Nolte; Elizabeth Gerber; Brittany Fiore-Gartland; Brad Chapman; Aurelia Moser; Nancy Wilkins-Diehr (CHI Extended Abstracts, 2018)

The 2018 Bioinformatics Open Source Conference (GCCBOSC 2018). - Nomi L. Harris; Heather Wiencko; Brad Chapman; Peter J. A. Cock; Karsten Hokamp; Hilmar Lapp; Christopher J. Fields; Bastian Greshake Tzovaras (F1000Research, 2018)