DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis. - Brad T. Sherman; Da Wei Huang; Qina Tan; Yongjian Guo; Stephan Bour; David Liu; Robert M. Stephens; Michael W. Baseler; H. Clifford Lane; Richard A. Lempicki (BMC Bioinform., 2007)

DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists. - Da Wei Huang; Brad T. Sherman; Qina Tan; Joseph Kir; David Liu; David Bryant; Yongjian Guo; Robert M. Stephens; Michael W. Baseler; H. Clifford Lane; Richard A. Lempicki (Nucleic Acids Res., 2007)

DAVID-WS: a stateful web service to facilitate gene/protein list analysis. - Xiaoli Jiao; Brad T. Sherman; Da Wei Huang; Robert M. Stephens; Michael W. Baseler; H. Clifford Lane; Richard A. Lempicki (Bioinform., 2012)

Distinguishing highly similar gene isoforms with a clustering-based bioinformatics analysis of PacBio single-molecule long reads. - Ma Liang; Castle Raley; Xin Zheng; Geetha Kutty; Emile Gogineni; Brad T. Sherman; Qiang Sun; Xiongfong Chen; Thomas Skelly; Kristine Jones; Robert M. Stephens; Bin Zhou; et al. (BioData Min., 2016)

Self-Tuning Spectral Clustering for Full-length Viral Quasispecies Reconstruction with PacBio Long Reads. - Xiaoli Jiao; Hiromi Imamichi; Tauseef Rehman; Rishub Nahar; Robin L. Dewar; H. Clifford Lane; Tomozumi Imamichi; Brad T. Sherman (BCB, 2017)

QuasiSeq: profiling viral quasispecies via self-tuning spectral clustering with PacBio long sequencing reads. - Xiaoli Jiao; Hiromi Imamichi; Brad T. Sherman; Rishub Nahar; Robin L. Dewar; H. Clifford Lane; Tomozumi Imamichi; Weizhong Chang (Bioinform., 2022)

DAVID: a web server for functional enrichment analysis and functional annotation of gene lists (2021 update). - Brad T. Sherman; Ming Hao; Ju Qiu; Xiaoli Jiao; Michael W. Baseler; H. Clifford Lane; Tomozumi Imamichi; Weizhong Chang (Nucleic Acids Res., 2022)

HIVGenoPipe: a nextflow pipeline for the detection of HIV-1 drug resistance using a real-time sample-specific reference sequence. - Thoai Dotrang; Brad T. Sherman; Lisheng Dai; Muhammad Ayub Khan; Helene C. Highbarger; Whitney Bruchey; Sylvain Laverdure; Michael W. Baseler; Tomozumi Imamichi; Robin L. Dewar; Weizhong Chang (BMC Bioinform., 2025)