Explicet: graphical user interface software for metadata-driven management, analysis and visualization of microbiome data. - Charles E. Robertson; J. Kirk Harris; Brandie D. Wagner; David Granger; Kathy Browne; Beth Tatem; Leah M. Feazel; Kristin Park; Norman R. Pace; Daniel N. Frank (Bioinform., 2013)

Evaluation of estimation quality of a general paradigm for indexing animal abundance when observations are counts. - Benjamin Shulman; Brandie D. Wagner; Gary K. Grunwald; Richard M. Engeman (Ecol. Informatics, 2016)

tidyMicro: a pipeline for microbiome data analysis and visualization using the tidyverse in R. - Charlie M. Carpenter; Daniel N. Frank; Kayla Williamson; Jaron Arbet; Brandie D. Wagner; Katerina J. Kechris; Miranda Kroehl (BMC Bioinform., 2021)

CANTARE: finding and visualizing network-based multi-omic predictive models. - Janet C. Siebert; Martine Saint-Cyr; Sarah J. Borengasser; Brandie D. Wagner; Catherine A. Lozupone; Carsten Görg (BMC Bioinform., 2021)

Autonomous artificial intelligence increases real-world specialist clinic productivity in a cluster-randomized trial. - Michael D. Abràmoff; Noelle Whitestone; Jennifer L. Patnaik; Emily Rich; Munir Ahmed; Lutful Husain; Mohammad Yeadul Hassan; Md. Sajidul Huq Tanjil; Dena Weitzman; Tinglong Dai; Brandie D. Wagner; David H. Cherwek; et al. (npj Digit. Medicine, 2023)