An Algebraic Approach to Reverse Engineering with an Application to Biochemical Networks. - Brandilyn Suzanne Stigler (2005)

Computing Gröbner bases of ideals of few points in high dimensions. - Winfried Just; Brandilyn Stigler (ACM Commun. Comput. Algebra, 2006)

A Gröbner fan method for biochemical network modeling. - Elena S. Dimitrova; Abdul Salam Jarrah; Reinhard C. Laubenbacher; Brandilyn Stigler (ISSAC, 2007)

Reverse-engineering of polynomial dynamical systems. - Abdul Salam Jarrah; Reinhard C. Laubenbacher; Brandilyn Stigler; Michael Eugene Stillman (Adv. Appl. Math., 2007)

Applications of the gröbner fan to gene network reconstruction (abstract only). - Elena S. Dimitrova; Brandilyn Stigler; Abdul Salam Jarrah; Reinhard C. Laubenbacher (ACM Commun. Comput. Algebra, 2008)

Boolean Models Can Explain Bistability in the lac Operon. - Alan Veliz-Cuba; Brandilyn Stigler (J. Comput. Biol., 2011)

Parameter estimation for Boolean models of biological networks. - Elena S. Dimitrova; Luis David García-Puente; Franziska Hinkelmann; Abdul Salam Jarrah; Reinhard C. Laubenbacher; Brandilyn Stigler; Michael Eugene Stillman; Paola Vera-Licona (Theor. Comput. Sci., 2011)

A regulatory network modeled from wild-type gene expression data guides functional predictions in Caenorhabditis elegans development. - Brandilyn Stigler; Helen M. Chamberlin (BMC Syst. Biol., 2012)

Algebraic model selection and experimental design in biological data science. - Elena S. Dimitrova; Jingzhen Hu; Qingzhong Liang; Brandilyn Stigler; Anyu Zhang (Adv. Appl. Math., 2022)

Revealing the canalizing structure of Boolean functions: Algorithms and applications. - Elena S. Dimitrova; Brandilyn Stigler; Claus Kadelka; David Murrugarra (Autom., 2022)

Cyclone: open-source package for simulation and analysis of finite dynamical systems. - Elena S. Dimitrova; Adam C. Knapp; Brandilyn Stigler; Michael Eugene Stillman (Bioinform., 2023)

Algebraic Experimental Design: Theory and Computation. - Elena S. Dimitrova; Cameron H. Fredrickson; Nicholas A. Rondoni; Brandilyn Stigler; Alan Veliz-Cuba (SIAM J. Appl. Algebra Geom., 2024)