Genomic analysis of gene regulation complexity. - Brandon Barker; Jim Lund (BMC Bioinform., 2008)

Yeast 5 - an expanded reconstruction of the Saccharomyces cerevisiae metabolic network. - Benjamin D. Heavner; Kieran Smallbone; Brandon Barker; Pedro Mendes 001; Larry P. Walker (BMC Syst. Biol., 2012)

A robust and efficient method for estimating enzyme complex abundance and metabolic flux from expression data. - Brandon E. Barker; Narayanan Sadagopan; Yiping Wang; Kieran Smallbone; Christopher R. Myers; Hongwei Xi; Jason W. Locasale; Zhenglong Gu (Comput. Biol. Chem., 2015)

Self-Scaling Clusters and Reproducible Containers to Enable Scientific Computing. - Peter Z. Vaillancourt; J. Eric Coulter; Richard Knepper; Brandon Barker (HPEC, 2020)

Using Containers to Create More Interactive Online Training and Education Materials. - Susan Mehringer; Brandon Barker (PEARC, 2020)

Reproducible and Portable Workflows for Scientific Computing and HPC in the Cloud. - Peter Vaillancourt; Bennett Wineholt; Brandon Barker; Plato Deliyannis; Jackie Zheng; Akshay Suresh; Adam Brazier; Rich Knepper; Rich Wolski (PEARC, 2020)

Singularity-EOS: Performance Portable Equations of State and Mixed Cell Closures. - Jonah M. Miller; Daniel Holladay; Jeffrey H. Peterson; Christopher M. Mauney; Richard Berger; Anna Pietarila Graham; Karen C. Tsai; Brandon Barker; Alexander Holas; Ann E. Mattsson; Mariam Gogilashvili; Joshua C. Dolence; et al. (J. Open Source Softw., 2024)