SA-SSR: a suffix array-based algorithm for exhaustive and efficient SSR discovery in large genetic sequences. - Brandon D. Pickett; S. M. Karlinsey; C. E. Penrod; Michael J. Cormier; Mark T. W. Ebbert; Dennis K. Shiozawa; C. J. Whipple; Perry G. Ridge (Bioinform., 2016)

Evaluating the necessity of PCR duplicate removal from next-generation sequencing data and a comparison of approaches. - Mark T. W. Ebbert; Mark E. Wadsworth; Lyndsay A. Staley; Kaitlyn L. Hoyt; Brandon D. Pickett; Justin Miller; John Duce; John S. K. Kauwe; Perry G. Ridge (BMC Bioinform., 2016)

Kmer-SSR: a fast and exhaustive SSR search algorithm. - Brandon D. Pickett; Justin Miller; Perry G. Ridge (Bioinform., 2017)

JustOrthologs: a fast, accurate and user-friendly ortholog identification algorithm. - Justin Miller; Brandon D. Pickett; Perry G. Ridge (Bioinform., 2019)