Automated renal histopathology: digital extraction and quantification of renal pathology. - Pinaki Sarder; Brandon Ginley; John Tomaszewski 001 (Digital Pathology, 2016)

Identification and characterization of neutrophil extracellular trap shapes in flow cytometry. - Brandon Ginley; Tiffany Emmons; Prabhu Sasankan; Constantin Urban; Brahm H. Segal; Pinaki Sarder (Digital Pathology, 2017)

Automatic computational labeling of glomerular textural boundaries. - Brandon Ginley; John Tomaszewski 001; Pinaki Sarder (Digital Pathology, 2017)

Computational analysis of the structural progression of human glomeruli in diabetic nephropathy. - Brandon G. Ginley; John Tomaszewski 001; Kuang-Yu Jen; Agnes B. Fogo; Sanjay Jain 006; Pinaki Sarder (Digital Pathology, 2018)

Glomerular detection and segmentation from multimodal microscopy images using a Butterworth band-pass filter. - Darshana Govind; Brandon Ginley; Brendon Lutnick; John Tomaszewski 001; Pinaki Sarder (Digital Pathology, 2018)

Iterative annotation to ease neural network training: Specialized machine learning in medical image analysis. - Brendon Lutnick; Brandon Ginley; Darshana Govind; Sean D. McGarry; Peter S. LaViolette; Rabi Yacoub; Sanjay Jain 006; John Tomaszewski 001; Kuang-Yu Jen; Pinaki Sarder (CoRR, 2018)

An integrated iterative annotation technique for easing neural network training in medical image analysis. - Brendon Lutnick; Brandon Ginley; Darshana Govind; Sean D. McGarry; Peter S. LaViolette; Rabi Yacoub; Sanjay Jain 006; John Tomaszewski 001; Kuang-Yu Jen; Pinaki Sarder (Nat. Mach. Intell., 2019)

Fully automated classification of glomerular lesions in lupus nephritis. - Brandon Ginley; Kuang-Yu Jen; Avi Rosenberg; Giovanni Maria Rossi; Sanjay Jain 006; Pinaki Sarder (Digital Pathology, 2020)

Generative modeling for label-free glomerular modeling and classification. - Brendon Lutnick; Brandon Ginley; Kuang-Yu Jen; Wen Dong 001; Pinaki Sarder (Digital Pathology, 2020)

Generative modeling for renal microanatomy. - Leema Krishna Murali; Brendon Lutnick; Brandon Ginley; John Tomaszewski 001; Pinaki Sarder (Digital Pathology, 2020)

Neural Network Segmentation of Interstitial Fibrosis, Tubular Atrophy, and Glomerulosclerosis in Renal Biopsies. - Brandon Ginley; Kuang-Yu Jen; Avi Rosenberg; Felicia Yen; Sanjay Jain 006; Agnes B. Fogo; Pinaki Sarder (CoRR, 2020)

Automated detection and quantification of Wilms' Tumor 1-positive cells in murine diabetic kidney disease. - Darshana Govind; Briana A. Santo; Brandon Ginley; Rabi Yacoub; Avi Z. Rosenberg; Kuang-Yu Jen; Vighnesh Walavalkar; Gregory E. Wilding; Amber M. Worral; Imtiaz Mohammad; Pinaki Sarder (Digital Pathology, 2021)

In silico multi-compartment detection based on multiplex immunohistochemical staining in renal pathology. - Kuang-Yu Jen; Leema Krishna Murali; Brendon Lutnick; Brandon Ginley; Darshana Govind; Hidetoshi Mori; Guofeng Gao; Pinaki Sarder (Digital Pathology, 2021)

A distributed system improves inter-observer and AI concordance in annotating interstitial fibrosis and tubular atrophy. - Avinash Kammardi Shashiprakash; Brendon Lutnick; Brandon Ginley; Darshana Govind; Nicholas J. Lucarelli; Kuang-Yu Jen; Avi Z. Rosenberg; Anatoly Urisman; Vighnesh Walavalkar; Jonathan E. Zuckerman; Marco Delsante; Mei Lin Z. Bissonnette; et al. (Digital Pathology, 2021)

Histo-fetch - On-the-fly processing of gigapixel whole slide images simplifies and speeds neural network training. - Brendon Lutnick; Leema Krishna Murali; Brandon Ginley; Pinaki Sarder (CoRR, 2021)

HistoLens: a generalizable tool for increasing accessibility and interpretability of quantitative analyses in digital pathology. - Samuel P. Border; Brandon Ginley; John E. Tomaszewski; Pinaki Sarder (Digital and Computational Pathology, 2022)

Automated tubular morphometric visualization for whole kidney biopsy. - Neil Kavthekar; Brandon Ginley; Samuel P. Border; Nicholas J. Lucarelli; Kuang-Yu Jen; Pinaki Sarder (Digital and Computational Pathology, 2022)

Computational integration of renal histology and urinary proteomics using neural networks. - Nicholas J. Lucarelli; Donghwan Yun; Dohyun Han; Brandon Ginley; Kyung Chul Moon; Avi Rosenberg; John Tomaszewski 001; Seung Seok Han; Pinaki Sarder (Digital and Computational Pathology, 2022)

Automated reference kidney histomorphometry using a panoptic segmentation neural network correlates to patient demographics and creatinine. - Brandon Ginley; Nicholas J. Lucarelli; Jarcy Zee; Sanjay Jain 006; Seung Seok Han; Luis Rodrigues; Michelle L. Wong; Kuang-Yu Jen; Pinaki Sarder (Digital and Computational Pathology, 2023)