Utilizing smart cards for authentication and compliance tracking in a diabetes case management system. - Michael K. Baldwin; Brandon M. Malone (ACM Southeast Regional Conference, 2008)

Tracking requirements and threats for secure software development. - Brandon M. Malone; Ambareen Siraj (ACM Southeast Regional Conference, 2008)

Integrating phenotype and gene expression data for predicting gene function. - Brandon M. Malone; Andy D. Perkins; Susan M. Bridges (BMC Bioinform., 2009)

Memory-Efficient Dynamic Programming for Learning Optimal Bayesian Networks. - Brandon M. Malone; Changhe Yuan; Eric A. Hansen (AAAI, 2011)

Learning Optimal Bayesian Networks Using A* Search. - Changhe Yuan; Brandon M. Malone; XiaoJian Wu (IJCAI, 2011)

Improving the Scalability of Optimal Bayesian Network Learning with External-Memory Frontier Breadth-First Branch and Bound Search. - Brandon M. Malone; Changhe Yuan; Eric A. Hansen; Susan Bridges (UAI, 2011)

The Proteogenomic Mapping Tool. - William S. Sanders; Nan Wang 002; Susan M. Bridges; Brandon M. Malone; Yoginder S. Dandass; Fiona M. McCarthy; Bindu Nanduri; Mark L. Lawrence; Shane C. Burgess (BMC Bioinform., 2011)

An Improved Admissible Heuristic for Learning Optimal Bayesian Networks. - Changhe Yuan; Brandon M. Malone (UAI, 2012)

Empirical evaluation of scoring functions for Bayesian network model selection. - Zhifa Liu; Brandon M. Malone; Changhe Yuan (BMC Bioinform., 2012)

A Depth-First Branch and Bound Algorithm for Learning Optimal Bayesian Networks. - Brandon M. Malone; Changhe Yuan (GKR, 2013)

Predicting the Flexibility of Dynamic Loop Scheduling Using an Artificial Neural Network. - Srishti Srivastava; Brandon M. Malone; Nitin Sukhija; Ioana Banicescu; Florina M. Ciorba (ISPDC, 2013)

Evaluating Anytime Algorithms for Learning Optimal Bayesian Networks. - Brandon M. Malone; Changhe Yuan (UAI, 2013)

Learning Optimal Bayesian Networks: A Shortest Path Perspective. - Changhe Yuan; Brandon M. Malone (J. Artif. Intell. Res., 2013)

Tightening Bounds for Bayesian Network Structure Learning. - Xiannian Fan; Changhe Yuan; Brandon M. Malone (AAAI, 2014)

Predicting the Hardness of Learning Bayesian Networks. - Brandon M. Malone; Kustaa Kangas; Matti Järvisalo; Mikko Koivisto; Petri Myllymäki (AAAI, 2014)

Learning Optimal Bounded Treewidth Bayesian Networks via Maximum Satisfiability. - Jeremias Berg; Matti Järvisalo; Brandon M. Malone (AISTATS, 2014)

Portfolio-Based Selection of Robust Dynamic Loop Scheduling Algorithms Using Machine Learning. - Nitin Sukhija; Brandon M. Malone; Srishti Srivastava; Ioana Banicescu; Florina M. Ciorba (IPDPS Workshops, 2014)

Finding Optimal Bayesian Network Structures with Constraints Learned from Data. - Xiannian Fan; Brandon M. Malone; Changhe Yuan (UAI, 2014)

MaxSAT-Based Cutting Planes for Learning Graphical Models. - Paul Saikko; Brandon M. Malone; Matti Järvisalo (CPAIOR, 2015)

Hashing-Based Hybrid Duplicate Detection for Bayesian Network Structure Learning. - Niklas Jahnsson; Brandon M. Malone; Petri Myllymäki (AMBN@JSAI-isAI, 2015)

Impact of Learning Strategies on the Quality of Bayesian Networks: An Empirical Evaluation. - Brandon M. Malone; Matti Järvisalo; Petri Myllymäki (UAI, 2015)

Advanced Methodologies for Bayesian Networks 2017: Preface. - Joe Suzuki; Antti Hyttinen; Brandon M. Malone (AMBN, 2017)

AS-ASL: Algorithm Selection with Auto-sklearn. - Brandon M. Malone; Kustaa Kangas; Matti Järvisalo; Mikko Koivisto; Petri Myllymäki (OASC, 2017)

Duplicate Detection for Bayesian Network Structure Learning. - Niklas Jahnsson; Brandon M. Malone; Petri Myllymäki (New Gener. Comput., 2017)

Knowledge Graph Completion to Predict Polypharmacy Side Effects. - Brandon M. Malone; Alberto García-Durán; Mathias Niepert (DILS, 2018)

Learning Representations of Missing Data for Predicting Patient Outcomes. - Brandon M. Malone; Alberto García-Durán; Mathias Niepert (CoRR, 2018)

Empirical hardness of finding optimal Bayesian network structures: algorithm selection and runtime prediction. - Brandon M. Malone; Kustaa Kangas; Matti Järvisalo; Mikko Koivisto; Petri Myllymäki (Mach. Learn., 2018)

Early Detection of Infection Chains & Outbreaks: Use Case Infection Control. - A. Sargeant; Tatiana von Landesberger; Claas Baier; F. Bange; Alexander Dalpke; Tim Eckmanns; Stephan Glöckner; Martin Kaase; Gérard Krause; Michael Marschollek; Brandon M. Malone; Mathias Niepert; et al. (EFMI-STC, 2019)

BERTMHC: improved MHC-peptide class II interaction prediction with transformer and multiple instance learning. - Jun Cheng 007; Kaïdre Bendjama; Karola Rittner; Brandon M. Malone (Bioinform., 2021)