Interpretation of differential gene expression results of RNA-seq data: review and integration. - Adam McDermaid; Brandon Monier; Jing Zhao; Bingqiang Liu; Qin Ma 003 (Briefings Bioinform., 2019)

IRIS-EDA: An integrated RNA-Seq interpretation system for gene expression data analysis. - Brandon Monier; Adam McDermaid; Cankun Wang; Jing Zhao; Allison J. Miller; Anne Fennell; Qin Ma 003 (PLoS Comput. Biol., 2019)

The Practical Haplotype Graph, a platform for storing and using pangenomes for imputation. - Peter J. Bradbury; Terry M. Casstevens; Sarah E. Jensen; L. C. Johnson; Z. R. Miller; Brandon Monier; M. C. Romay; B. Song; Edward S. Buckler (Bioinform., 2022)

rTASSEL: An R interface to TASSEL for analyzing genomic diversity. - Brandon Monier; Terry M. Casstevens; Peter J. Bradbury; Edward S. Buckler (J. Open Source Softw., 2022)