A support vector machine for identification of single-nucleotide polymorphisms from next-generation sequencing data. - Brendan D. O'Fallon; Whitney Wooderchak-Donahue; David K. Crockett (Bioinform., 2013)

VarRanker: rapid prioritization of sequence variations associated with human disease. - Brendan D. O'Fallon; Whitney Wooderchak-Donahue; Pinar Bayrak-Toydemir; David K. Crockett (BMC Bioinform., 2013)

Variant Tool Chest: an improved tool to analyze and manipulate variant call format (VCF) files. - Mark T. W. Ebbert; Mark E. Wadsworth; Kevin L. Boehme; Kaitlyn L. Hoyt; Aaron R. Sharp; Brendan D. O'Fallon; John S. K. Kauwe; Perry G. Ridge (BMC Bioinform., 2014)