TIGRFAMs: a protein family resource for the functional identification of proteins. - Daniel H. Haft; Brendan J. Loftus; Delwood L. Richardson; Fan Yang; Jonathan A. Eisen; Ian T. Paulsen; Owen White (Nucleic Acids Res., 2001)

BINDER: computationally inferring a gene regulatory network for Mycobacterium abscessus. - Patrick M. Staunton; Aleksandra A. Miranda-CasoLuengo; Brendan J. Loftus; Isobel Claire Gormley (BMC Bioinform., 2019)