ACG: rapid inference of population history from recombining nucleotide sequences. - Brendan O'Fallon (BMC Bioinform., 2013)

TreesimJ: a flexible, forward time population genetic simulator. - Brendan O'Fallon (Bioinform., 2016)

Algorithmic improvements for discovery of germline copy number variants in next-generation sequencing data. - Brendan O'Fallon; Jacob Durtschi; Ana Kellogg; Tracey Lewis; Devin Close; Hunter Best (BMC Bioinform., 2022)

Clinical Validation of a Real-Time Machine Learning-based System for the Detection of Acute Myeloid Leukemia by Flow Cytometry. - Lauren M. Zuromski; Jacob Durtschi; Aimal Aziz; Jeffrey Chumley; Mark Dewey; Paul English; Muir Morrison; Keith Simmon; Blaine Whipple; Brendan O'Fallon; David P. Ng (CoRR, 2024)