Tailored gene array databases: applications in mechanistic toxicology. - Tatiana V. Karpinets; Brent D. Foy; John M. Frazier (Bioinform., 2004)

Biomolecular Network Simulator: software for stochastic simulation of cellular biological processes. - Yaroslav Chushak; Brent D. Foy; John M. Frazier (SpringSim (2), 2007)

Stochastic simulation and analysis of biomolecular reaction networks. - John M. Frazier; Yaroslav Chushak; Brent D. Foy (BMC Syst. Biol., 2009)

Mathematical modeling of 16S ribosomal DNA amplification reveals optimal conditions for the interrogation of complex microbial communities with phylogenetic microarrays. - Oleg Paliy; Brent D. Foy (Bioinform., 2011)