The oligodeoxynucleotide sequences corresponding to never-expressed peptide motifs are mainly located in the non-coding strand. - Giovanni Capone; Giuseppe Novello; Candida Fasano; Brett Trost; Mikelis G. Bickis; Anthony J. Kusalik; Darja Kanduc (BMC Bioinform., 2010)

Computational prediction of eukaryotic phosphorylation sites. - Brett Trost; Anthony J. Kusalik (Bioinform., 2011)

DAPPLE: a pipeline for the homology-based prediction of phosphorylation sites. - Brett Trost; Ryan Arsenault; Philip J. Griebel; Scott Napper; Anthony J. Kusalik (Bioinform., 2013)

Computational phosphorylation site prediction in plants using random forests and organism-specific instance weights. - Brett Trost; Anthony J. Kusalik (Bioinform., 2013)

The UniFrac significance test generates different outputs given semantically equivalent inputs. - Jeffrey R. Long; Qingxiang Yan; Brett Trost; Anthony J. Kusalik (BCB, 2014)

A better sequence-read simulator program for metagenomics. - Stephen Johnson; Brett Trost; Jeffrey R. Long; Vanessa Pittet; Anthony J. Kusalik (BMC Bioinform., 2014)

Equivalent input produces different output in the UniFrac significance test. - Jeffrey R. Long; Vanessa Pittet; Brett Trost; Qingxiang Yan; David Vickers; Monique Haakensen; Anthony J. Kusalik (BMC Bioinform., 2014)

Case study: using sequence homology to identify putative phosphorylation sites in an evolutionarily distant species (honeybee). - Brett Trost; Scott Napper; Anthony J. Kusalik (Briefings Bioinform., 2015)

EpIC: a rational pipeline for epitope immunogenicity characterization. - Kristen Marciniuk; Brett Trost; Scott Napper (Bioinform., 2015)