PhyloCorrelate: inferring bacterial gene-gene functional associations through large-scale phylogenetic profiling. - Benjamin Jean-Marie Tremblay; Briallen Lobb; Andrew C. Doxey (Bioinform., 2021)

AnnoView enables large-scale analysis, comparison, and visualization of microbial gene neighborhoods. - Xin Wei; Huagang Tan; Briallen Lobb; William Zhen; Zijing Wu; Donovan H. Parks; Josh D. Neufeld; Gabriel Moreno-Hagelsieb; Andrew C. Doxey (Briefings Bioinform., 2024)