Systematic evaluation of transcriptomics-based deconvolution methods and references using thousands of clinical samples. - Brian B. Nadel; Meritxell Oliva; Benjamin L. Shou; Keith Mitchell; Feiyang Ma; Dennis J. Montoya; Alice Mouton; Sarah Kim-Hellmuth; Barbara E. Stranger; Matteo Pellegrini; Serghei Mangul (Briefings Bioinform., 2021)

Rigorous benchmarking of T-cell receptor repertoire profiling methods for cancer RNA sequencing. - Kerui Peng; Theodore S. Nowicki; Katie Campbell; Mohammad Vahed; Dandan Peng; Yiting Meng; Anish Nagareddy; Yu-Ning Huang; Aaron Karlsberg; Zachary Miller; Jaqueline J. Brito; Brian B. Nadel; et al. (Briefings Bioinform., 2023)