treePL: divergence time estimation using penalized likelihood for large phylogenies. - Stephen A. Smith; Brian C. O'Meara (Bioinform., 2012)

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. - Arlin Stoltzfus; Hilmar Lapp; Naim Matasci; Helena F. Deus; Brian Sidlauskas; Christian M. Zmasek; Gaurav Vaidya; Enrico Pontelli; Karen Cranston; Rutger A. Vos; Campbell O. Webb; Luke J. Harmon; et al. (BMC Bioinform., 2013)

Evolutionary models for the retention of adult-adult social play in primates: The roles of diet and other factors associated with resource acquisition. - Brian C. O'Meara; Kerrie Lewis Graham; Sergio M. Pellis; Gordon M. Burghardt (Adapt. Behav., 2015)

MonoPhy: A simple R package to find and visualize monophyly issues. - Orlando Schwery; Brian C. O'Meara (PeerJ Prepr., 2015)

Noise leads to the perceived increase in evolutionary rates over short time scales. - Brian C. O'Meara; Jeremy M. Beaulieu (PLoS Comput. Biol., 2024)