Improving your software using static analysis to find bugs. - Brian Cole; Daniel Hakim; David Hovemeyer; Reuven Lazarus; William W. Pugh; Kristin Stephens (OOPSLA Companion, 2006)

AutoPH4: An Automated Method for Generating Pharmacophore Models from Protein Binding Pockets. - Siduo Jiang; Miklos Feher; Christopher I. Williams; Brian Cole; David E. Shaw (J. Chem. Inf. Model., 2020)

A Deep-Learning View of Chemical Space Designed to Facilitate Drug Discovery. - Paul Maragakis; Hunter M. Nisonoff; Brian Cole; David E. Shaw (J. Chem. Inf. Model., 2020)