Production of a Preliminary Quality Control Pipeline for Single Nuclei RNA-Seq and Its Application in the Analysis of Cell Type Diversity of Post-Mortem Human Brain Neocortex. - Brian D. Aevermann; Jamison M. McCorrison; Pratap Venepally; Rebecca D. Hodge; Trygve E. Bakken; Jeremy A. Miller; Mark Novotny; Danny N. Tran; Francisco Diez-Fuertes; Lena Christiansen; Fan Zhang; Frank Steemers; et al. (PSB, 2017)

Cell type discovery and representation in the era of high-content single cell phenotyping. - Trygve E. Bakken; Lindsay G. Cowell; Brian D. Aevermann; Mark Novotny; Rebecca D. Hodge; Jeremy A. Miller; Alexandra Lee; Ivan Chang; Jamison M. McCorrison; Bali Pulendran; Yu Qian; Nicholas J. Schork; et al. (BMC Bioinform., 2017)

Influenza Research Database: An integrated bioinformatics resource for influenza virus research. - Yun Zhang 021; Brian D. Aevermann; Tavis K. Anderson; David F. Burke; Gwenaelle Dauphin; Zhiping Gu; Sherry He; Sanjeev Kumar; Christopher N. Larsen; Alexandra J. Lee; Xiaomei Li; Catherine Macken; et al. (Nucleic Acids Res., 2017)

FR-Match: robust matching of cell type clusters from single cell RNA sequencing data using the Friedman-Rafsky non-parametric test. - Yun Zhang 021; Brian D. Aevermann; Trygve E. Bakken; Jeremy A. Miller; Rebecca D. Hodge; Ed S. Lein; Richard H. Scheuermann (Briefings Bioinform., 2021)

FastMix: a versatile data integration pipeline for cell type-specific biomarker inference. - Yun Zhang 021; Hao Sun; Aishwarya Mandava; Brian D. Aevermann; Tobias R. Kollmann; Richard H. Scheuermann; Xing Qiu; Yu Qian (Bioinform., 2022)

The Cell Ontology in the age of single-cell omics. - Shawn Zheng Kai Tan; Aleix Puig-Barbe; Damien Goutte-Gattat; Caroline Eastwood; Brian D. Aevermann; Alida Avola; James P. Balhoff; Ismail Ugur Bayindir; Jasmine Belfiore; Anita R. Caron; David S. Fischer; Nancy George; et al. (CoRR, 2025)