Structural genomics of histone tail recognition. - Minghua Wang; Man Wai Mok; Hong Harper; Wen Hwa Lee; Jinrong Min; Stefan Knapp; Udo C. T. Oppermann; Brian D. Marsden; Matthieu Schapira (Bioinform., 2010)

ChromoHub: a data hub for navigators of chromatin-mediated signalling. - Lihua Liu; Xi Ting Zhen; Emily Denton; Brian D. Marsden; Matthieu Schapira (Bioinform., 2012)

OOMMPPAA: A Tool To Aid Directed Synthesis by the Combined Analysis of Activity and Structural Data. - Anthony R. Bradley; Ian D. Wall; Darren V. S. Green; Charlotte M. Deane; Brian D. Marsden (J. Chem. Inf. Model., 2014)

WONKA: objective novel complex analysis for ensembles of protein-ligand structures. - Anthony R. Bradley; Ian D. Wall; Frank von Delft; Darren V. S. Green; Charlotte M. Deane; Brian D. Marsden (J. Comput. Aided Mol. Des., 2015)

SATurn: a modular bioinformatics framework for the design of robust maintainable web-based and standalone applications. - David R. Damerell; Claire Strain-Damerell; Sefa Garsot; Stephen P. Joyce; Paul Barrett; Brian D. Marsden (Bioinform., 2019)

UbiHub: a data hub for the explorers of ubiquitination pathways. - Lihua Liu; David R. Damerell; Leonidas Koukouflis; Yufeng Tong 001; Brian D. Marsden; Matthieu Schapira (Bioinform., 2019)

MichelaNglo: sculpting protein views on web pages without coding. - Matteo P. Ferla; Alistair T. Pagnamenta; David R. Damerell; Jenny C. Taylor; Brian D. Marsden (Bioinform., 2020)

Hotspots API: A Python Package for the Detection of Small Molecule Binding Hotspots and Application to Structure-Based Drug Design. - Peter R. Curran; Chris J. Radoux; Mihaela D. Smilova; Richard A. Sykes; Alicia P. Higueruelo; Anthony R. Bradley; Brian D. Marsden; David R. Spring; Tom L. Blundell; Andrew R. Leach; William R. Pitt; Jason C. Cole (J. Chem. Inf. Model., 2020)

Fragment Hotspot Mapping to Identify Selectivity-Determining Regions between Related Proteins. - Mihaela D. Smilova; Peter R. Curran; Chris J. Radoux; Frank von Delft; Jason C. Cole; Anthony R. Bradley; Brian D. Marsden (J. Chem. Inf. Model., 2022)

COMBATdb: a database for the COVID-19 Multi-Omics Blood ATlas. - Dapeng Wang; Vinod Kumar; Katie L. Burnham; Alexander J. Mentzer; Brian D. Marsden; Julian C. Knight (Nucleic Acids Res., 2023)

MolSnapper: Conditioning Diffusion for Structure-Based Drug Design. - Yael Ziv; Fergus Imrie; Brian D. Marsden; Charlotte M. Deane (J. Chem. Inf. Model., 2025)

Fragmenstein: predicting protein-ligand structures of compounds derived from known crystallographic fragment hits using a strict conserved-binding-based methodology. - Matteo P. Ferla; Ruben Sanchez-Garcia; Rachael Skyner; Stefan Gahbauer; Jenny C. Taylor; Frank von Delft; Brian D. Marsden; Charlotte M. Deane (J. Cheminformatics, 2025)