GDAP: a web tool for genome-wide protein disulfide bond prediction. - Brian D. O'Connor; Todd O. Yeates (Nucleic Acids Res., 2004)

SeqWare Query Engine: storing and searching sequence data in the cloud. - Brian D. O'Connor; Barry Merriman; Stanley F. Nelson (BMC Bioinform., 2010)

The Dockstore: enabling modular, community-focused sharing of Docker-based genomics tools and workflows. - Brian D. O'Connor; Denis Yuen; Vincent Chung; Andrew G. Duncan; Xiangkun Liu; Janice Patricia; Benedict Paten; Lincoln Stein; Vincent Ferretti (F1000Research, 2017)

Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics. - Shakuntala Baichoo; Yassine Souilmi; Sumir Panji; Gerrit Botha; Ayton Meintjes; Scott Hazelhurst; Hocine Bendou; Eugene de Beste; Phelelani T. Mpangase; Oussema Souiai; Mustafa Alghali; Long Yi; et al. (BMC Bioinform., 2018)

The Dockstore: enhancing a community platform for sharing reproducible and accessible computational protocols. - Denis Yuen; Louise Cabansay; Andrew G. Duncan; Gary Luu; Gregory Hogue; Charles Overbeck; Natalie Perez; Walt Shands; David Steinberg; Chaz Reid; Nneka Olunwa; Richard Hansen; et al. (Nucleic Acids Res., 2021)

A Framework for the Interoperability of Cloud Platforms: Towards FAIR Data in SAFE Environments. - Robert L. Grossman; Rebecca R. Boyles; Brandi N. Davis-Dusenbery; Amanda Haddock; Allison P. Heath; Brian D. O'Connor; Adam C. Resnick; Deanne M. Taylor; Stan Ahalt (CoRR, 2022)