Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications. - Brian D. Ondov; Anjana Varadarajan; Karla D. Passalacqua; Nicholas H. Bergman (Bioinform., 2008)

An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System. - Brian D. Ondov; Charles Cochran; Mark Landers; Gavin D. Meredith; Miroslav Dudas; Nicholas H. Bergman (Bioinform., 2010)

Interactive metagenomic visualization in a Web browser. - Brian D. Ondov; Nicholas H. Bergman; Adam M. Phillippy (BMC Bioinform., 2011)

Face to Face: Evaluating Visual Comparison. - Brian D. Ondov; Nicole Jardine; Niklas Elmqvist; Steven Franconeri (IEEE Trans. Vis. Comput. Graph., 2019)

The Perceptual Proxies of Visual Comparison. - Nicole Jardine; Brian D. Ondov; Niklas Elmqvist; Steven Franconeri (IEEE Trans. Vis. Comput. Graph., 2020)

Revealing Perceptual Proxies with Adversarial Examples. - Brian D. Ondov; Fumeng Yang; Matthew Kay 001; Niklas Elmqvist; Steven Franconeri (IEEE Trans. Vis. Comput. Graph., 2021)

Revealing Perceptual Proxies in Comparative Data Visualization. - Brian D. Ondov (2021)

A Dataset for Plain Language Adaptation of Biomedical Abstracts. - Kush Attal; Brian D. Ondov; Dina Demner-Fushman (CoRR, 2022)

CoronaViz: Visualizing Multilayer Spatiotemporal COVID-19 Data with Animated Geocircles. - Brian D. Ondov; Harsh B. Patel; Ai-Te Kuo; Hanan Samet; John H. Kastner; Yunheng Han; Hong Wei 001; Niklas Elmqvist (CoRR, 2022)

A survey of automated methods for biomedical text simplification. - Brian D. Ondov; Kush Attal; Dina Demner-Fushman (J. Am. Medical Informatics Assoc., 2022)

An efficient region expansion algorithm for regular triangulated meshes. - Brian D. Ondov; Hanan Samet (Pattern Recognit. Lett., 2023)

Sentence-Aligned Simplification of Biomedical Abstracts. - Brian D. Ondov; Dina Demner-Fushman (AIME (1), 2024)

Pedagogically Aligned Objectives Create Reliable Automatic Cloze Tests. - Brian D. Ondov; Kush Attal; Dina Demner-Fushman (NAACL-HLT, 2024)

Visualizing multilayer spatiotemporal epidemiological data with animated geocircles. - Brian D. Ondov; Harsh B. Patel; Ai-Te Kuo; John H. Kastner; Yunheng Han; Hong Wei 001; Niklas Elmqvist; Hanan Samet (J. Am. Medical Informatics Assoc., 2024)

JEBS: A Fine-grained Biomedical Lexical Simplification Task. - William Xia; Ishita Unde; Brian David Ondov; Dina Demner-Fushman (ACL (Findings), 2025)

Lessons from the TREC Plain Language Adaptation of Biomedical Abstracts (PLABA) track. - Brian D. Ondov; William Xia; Kush Attal; Ishita Unde; Jerry He; Dina Demner-Fushman (CoRR, 2025)