Will Widgets and Semantic Tagging Change Computational Biology? - Philip E. Bourne; Bojan Beran; Chunxiao Bi; Wolfgang Bluhm; Roland L. Dunbrack Jr.; Andreas Prlic; Greg B. Quinn; Peter W. Rose; Raship Shah; Wendy Tao; Brian D. Weitzner; Benjamin T. Yukich (PLoS Comput. Biol., 2010)

An Integrated Framework Advancing Membrane Protein Modeling and Design. - Rebecca F. Alford; Julia Koehler Leman; Brian D. Weitzner; Amanda M. Duran; Drew C. Tilley; Assaf Elazar; Jeffrey J. Gray (PLoS Comput. Biol., 2015)

RosettaAntibodyDesign (RAbD): A general framework for computational antibody design. - Jared Adolf-Bryfogle; Oleksandr Kalyuzhniy; Michael Kubitz; Brian D. Weitzner; Xiaozhen Hu; Yumiko Adachi; William R. Schief; Roland L. Dunbrack Jr. (PLoS Comput. Biol., 2018)

De novo design of potent and selective mimics of IL-2 and IL-15. - Daniel-Adriano Silva; Shawn Yu; Umut Y. Ulge; Jamie B. Spangler; Kevin M. Jude; Carlos Labão-Almeida; Lestat R. Ali; Alfredo Quijano-Rubio; Mikel Ruterbusch; Isabel Leung; Tamara Biary; Stephanie J. Crowley; et al. (Nat., 2019)

Better together: Elements of successful scientific software development in a distributed collaborative community. - Julia Koehler Leman; Brian D. Weitzner; P. Douglas Renfrew; Steven M. Lewis; Rocco Moretti; Andrew M. Watkins; Vikram Khipple Mulligan; Sergey Lyskov; Jared Adolf-Bryfogle; Jason W. Labonte; Justyna Krys; RosettaCommons Consortium; et al. (PLoS Comput. Biol., 2020)