EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments. - Ning Leng; Yuan Li; Brian E. McIntosh; Bao Kim Nguyen; Bret Duffin; Shulan Tian; James A. Thomson; Colin N. Dewey; Ron M. Stewart; Christina Kendziorski (Bioinform., 2015)

Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics. - Chris Barry; Matthew T. Schmitz; Cara Argus; Jennifer M. Bolin; Mitchell D. Probasco; Ning Leng; Bret Duffin; John W. Steill; Scott Swanson; Brian E. McIntosh; Ron M. Stewart; Christina Kendziorski; et al. (PLoS Comput. Biol., 2019)