Geometric Sketching of Single-Cell Data Preserves Transcriptional Structure. - Brian Hie; Hyunghoon Cho; Benjamin Demeo; Bryan Bryson; Bonnie Berger (RECOMB, 2019)

Learning Mutational Semantics. - Brian Hie; Ellen D. Zhong; Bryan Bryson; Bonnie Berger (NeurIPS, 2020)

Schema: metric learning enables interpretable synthesis of heterogeneous single-cell modalities. - Rohit Singh 001; Brian Hie; Ashwin Narayan; Bonnie Berger (Zenodo, 2021)

Learning inverse folding from millions of predicted structures. - Chloe Hsu; Robert Verkuil; Jason Liu; Zeming Lin; Brian Hie; Tom Sercu; Adam Lerer; Alexander Rives (ICML, 2022)

Generative artificial intelligence for de novo protein design. - Adam Winnifrith; Carlos Outeiral; Brian Hie (CoRR, 2023)