An Adaptive Dynamic Programming Algorithm for the Side Chain Placement Problem. - Andrew Leaver-Fay; Brian Kuhlman; Jack Snoeyink (Pacific Symposium on Biocomputing, 2005)

Rotamer-Pair Energy Calculations Using a Trie Data Structure. - Andrew Leaver-Fay; Brian Kuhlman; Jack Snoeyink (WABI, 2005)

RosettaDesign server for protein design. - Yi Liu; Brian Kuhlman (Nucleic Acids Res., 2006)

Maintaining solvent accessible surface area under rotamer substitution for protein design. - Andrew Leaver-Fay; Glenn L. Butterfoss; Jack Snoeyink; Brian Kuhlman (J. Comput. Chem., 2007)

On-the-Fly Rotamer Pair Energy Evaluation in Protein Design. - Andrew Leaver-Fay; Jack Snoeyink; Brian Kuhlman (ISBRA, 2008)

Protocols for Requirement-Driven Protein Design in the Rosetta Modeling Program. - Sharon L. Guffy; Frank D. Teets; Minnie I. Langlois; Brian Kuhlman (J. Chem. Inf. Model., 2018)

Better together: Elements of successful scientific software development in a distributed collaborative community. - Julia Koehler Leman; Brian D. Weitzner; P. Douglas Renfrew; Steven M. Lewis; Rocco Moretti; Andrew M. Watkins; Vikram Khipple Mulligan; Sergey Lyskov; Jared Adolf-Bryfogle; Jason W. Labonte; Justyna Krys; RosettaCommons Consortium; et al. (PLoS Comput. Biol., 2020)