Design of RNA splicing analysis null models for post hoc filtering of Drosophila head RNA-Seq data with the splicing analysis kit (Spanki). - David Sturgill; John H. Malone; Xia Sun; Harold E. Smith; Leonard Rabinow; Marie-Laure Samson; Brian Oliver (BMC Bioinform., 2013)

Changing Engines in Midstream: A Java Stream Computational Model for Big Data Processing. - Xueyuan Su; Garret Swart; Brian Goetz; Brian Oliver; Paul Sandoz (Proc. VLDB Endow., 2014)

NetREX: Network Rewiring Using EXpression - Towards Context Specific Regulatory Networks. - Yijie Wang 004; Dong-Yeon Cho; Hangnoh Lee; Brian Oliver; Teresa M. Przytycka (RECOMB, 2017)

Reconstruction of Gene Regulatory Networks by Integrating Biological Model and a Recommendation System. - Yijie Wang 004; Justin M. Fear; Isabelle Berger; Hangnoh Lee; Brian Oliver; Teresa M. Przytycka (RECOMB, 2020)

Stochastic Modeling of Gene Expression Evolution Uncovers Tissue- and Sex-Specific Properties of Expression Evolution in the Drosophila Genus. - Soumitra Pal 001; Brian Oliver; Teresa M. Przytycka (J. Comput. Biol., 2023)

Integrating massive RNA-seq data to elucidate transcriptome dynamics in Drosophila melanogaster. - Sheng Hu Qian; Meng-Wei Shi; Dan-Yang Wang; Justin M. Fear; Lu Chen; Yi-Xuan Tu; Hong-Shan Liu; Yuan Zhang; Shuai-Jie Zhang; Shan-Shan Yu; Brian Oliver; Zhen-Xia Chen (Briefings Bioinform., 2023)