Towards an understanding of protein-protein interaction network heirarchies. Analysis of DnaN-binding peptide motifs in members of protein families interacting with the eubacterial processivity clamp, the subunit of DNA Polymerase III. - Brian P. Dalrymple; Gene Wijffels; Kritaya Kongsuwan; Philip J. Jennings (APBC, 2003)

A rapid method for computationally inferring transcriptome coverage and microarray sensitivity. - Toni Reverter-Gomez; S. M. McWilliam; Wes Barris; Brian P. Dalrymple (Bioinform., 2005)

Validation of alternative methods of data normalization in gene co-expression studies. - Antonio Reverter; Wes Barris; Sean McWilliam; Keren A. Byrne; Yong H. Wang; Siok-Hwee Tan; Nicholas J. Hudson 001; Brian P. Dalrymple (Bioinform., 2005)

Simultaneous identification of differential gene expression and connectivity in inflammation, adipogenesis and cancer. - Antonio Reverter; Aaron Ingham; Sigrid A. Lehnert; Siok-Hwee Tan; Yonghong Wang; Abhirami Ratnakumar; Brian P. Dalrymple (Bioinform., 2006)

Mining tissue specificity, gene connectivity and disease association to reveal a set of genes that modify the action of disease causing genes. - Antonio Reverter; Aaron Ingham; Brian P. Dalrymple (BioData Min., 2008)

Using a 3D virtual muscle model to link gene expression changes during myogenesis to protein spatial location in muscle. - Ashley J. Waardenberg; Antonio Reverter; Christine A. Wells; Brian P. Dalrymple (BMC Syst. Biol., 2008)

A Differential Wiring Analysis of Expression Data Correctly Identifies the Gene Containing the Causal Mutation. - Nicholas J. Hudson 001; Antonio Reverter; Brian P. Dalrymple (PLoS Comput. Biol., 2009)

Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data. - Antonio Reverter; Nicholas J. Hudson 001; Shivashankar H. Nagaraj; Miguel Pérez-Enciso; Brian P. Dalrymple (Bioinform., 2010)

RNF14 is a regulator of mitochondrial and immune function in muscle. - Aaron Ingham; Simone A. Osborne; Moira Menzies; Suzie Briscoe; Wei Chen; Kritaya Kongsuwan; Antonio Reverter; Angela Jeanes; Brian P. Dalrymple; Gene Wijffels; Robert A. Seymour; Nicholas J. Hudson 001 (BMC Syst. Biol., 2014)

A Developmental Gene Expression Atlas Reveals Novel Biological Basis of Complex Phenotypes in Sheep. - Bingru Zhao; Hanpeng Luo; Xuefeng Fu; Guoming Zhang; Emily L. Clark; Feng Wang; Brian P. Dalrymple; V. Hutton Oddy; Philip E. Vercoe; Cuiling Wu; George E. Liu; Cong-jun Li; et al. (Genom. Proteom. Bioinform., 2025)