Analysis of Large Screening Data Sets via Adaptively Grown Phylogenetic-Like Trees. - Christos A. Nicolaou; Susan Y. Tamura; Brian P. Kelley; Susan I. Bassett; Ruth F. Nutt (J. Chem. Inf. Comput. Sci., 2002)

The Potential of a Chemical Graph Transformation System. - Maneesh K. Yadav; Brian P. Kelley; Steven M. Silverman (ICGT, 2004)

PathBLAST: a tool for alignment of protein interaction networks. - Brian P. Kelley; Bingbing Yuan; Fran Lewitter; Roded Sharan; Brent R. Stockwell; Trey Ideker (Nucleic Acids Res., 2004)

Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. - Roded Sharan; Trey Ideker; Brian P. Kelley; Ron Shamir; Richard M. Karp (J. Comput. Biol., 2005)

The Application of Statistical Methods to Cognate Docking: A Path Forward? - Paul C. D. Hawkins; Brian P. Kelley; Gregory L. Warren (J. Chem. Inf. Model., 2014)

POSIT: Flexible Shape-Guided Docking For Pose Prediction. - Brian P. Kelley; Scott P. Brown; Gregory L. Warren; Steven W. Muchmore (J. Chem. Inf. Model., 2015)

Prediction of pKa Using Machine Learning Methods with Rooted Topological Torsion Fingerprints: Application to Aliphatic Amines. - Yipin Lu; Shankara Anand; William A. Shirley; Peter Gedeck; Brian P. Kelley; Suzanne Skolnik; Stephane Rodde; Mai Nguyen; Mika K. Lindvall; Weiping Jia (J. Chem. Inf. Model., 2019)