Automated Design of Assemblable, Modular, Synthetic Chromosomes. - Sarah M. Richardson; Brian S. Olson; Jessica S. Dymond; Randal C. Burns; Srinivasan Chandrasegaran; Jef D. Boeke; Amarda Shehu; Joel S. Bader (PPAM (2), 2009)

Enhancing Sampling of the Conformational Space Near the Protein Native State. - Brian S. Olson; Kevin Molloy; Amarda Shehu (BIONETICS, 2010)

Guiding the Search for Native-like Protein Conformations with an Ab-initio Tree-based Exploration. - Amarda Shehu; Brian S. Olson (Int. J. Robotics Res., 2010)

Protein conformational search with geometric projections. - Brian S. Olson; S. Farid Hendi; Amarda Shehu (BIBM Workshops, 2011)

Populating Local Minima in the Protein Conformational Space. - Brian S. Olson; Amarda Shehu (BIBM, 2011)

In Search of the protein Native State with a Probabilistic Sampling Approach. - Brian S. Olson; Kevin Molloy; Amarda Shehu (J. Bioinform. Comput. Biol., 2011)

An evolutionary search framework to efficiently sample local minima in the protein conformational space. - Brian S. Olson; Amarda Shehu (BCB, 2012)

Efficient basin hopping in the protein energy surface. - Brian S. Olson; Amarda Shehu (BIBM, 2012)

Jumping low, jumping high: Controlling hopping in the protein energy surface. - Brian S. Olson; Amarda Shehu (BIBM Workshops, 2012)

A population-based evolutionary algorithm for sampling minima in the protein energy surface. - Sameh N. Saleh; Brian S. Olson; Amarda Shehu (BIBM Workshops, 2012)

An evolutionary framework to sample near-native protein conformations. - Sameh N. Saleh; Brian S. Olson; Amarda Shehu (BIBM Workshops, 2012)

Basin Hopping as a General and Versatile Optimization Framework for the Characterization of Biological Macromolecules. - Brian S. Olson; Irina Hashmi; Kevin Molloy; Amarda Shehu (Adv. Artif. Intell., 2012)

Guiding Probabilistic Search of the protein conformational Space with Structural Profiles. - Brian S. Olson; Kevin Molloy; S. Farid Hendi; Amarda Shehu (J. Bioinform. Comput. Biol., 2012)

Multi-Objective Stochastic Search for Sampling Local Minima in the Protein Energy Surface. - Brian S. Olson; Amarda Shehu (BCB, 2013)

Off-lattice protein structure prediction with homologous crossover. - Brian S. Olson; Kenneth A. De Jong; Amarda Shehu (GECCO, 2013)