VASP-S: A Volumetric Analysis and Statistical Model for Predicting Steric Influences on Protein-Ligand Binding Specificity. - Brian Yuan Chen; Soutir Bandyopadhyay (BIBM, 2011)

A statistical model of overlapping volume in ligand binding cavities. - Brian Yuan Chen; Soutir Bandyopadhyay (BIBM Workshops, 2011)

Aligning ligand binding cavities by optimizing superposed volume. - Ruobing Chen 001; Katya Scheinberg; Brian Yuan Chen (BIBM, 2012)

A Regionalizable Statistical Model of Intersecting Regions in protein-ligand binding Cavities. - Brian Yuan Chen; Soutir Bandyopadhyay (J. Bioinform. Comput. Biol., 2012)

Isolating Influential Regions of Electrostatic Focusing in Protein and DNA Structure. - Seth Blumenthal; Yisheng Tang; Wenjie Yang; Brian Yuan Chen (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Variational Bayesian clustering on protein cavity conformations for detecting influential amino acids. - Ziyi Guo; Brian Yuan Chen (BCB, 2014)

A flexible volumetric comparison of protein cavities can reveal patterns in ligand binding specificity. - Ziyi Guo; Trevor Kuhlengel; Steven R. Stinson; Seth Blumenthal; Brian Yuan Chen; Soutir Bandyopadhyay (BCB, 2014)

A gesture-based interface for the exploration and classification of protein binding cavities. - Zachary A. Daniels; Steven R. Stinson; Shenchi Tian; Evan Mulbry; Brian Yuan Chen (MARS@MobiSys, 2014)

Predicting protein-ligand binding specificity based on ensemble clustering. - Ziyi Guo; Brian Yuan Chen (BIBM, 2015)

Superposition of protein structures using electrostatic isopotentials. - Ziyi Guo; Katya Scheinberg; Juliana Hong; Brian Yuan Chen (BIBM, 2015)

A statistical model of electrostatic isopotential variation in serine protease binding cavities. - Rachel Y. Okun; Brian Yuan Chen (BIBM, 2015)

Conformational Sampling Reveals Amino Acids with a Steric Influence on Specificity. - Ziyi Guo; Brian Yuan Chen (J. Comput. Biol., 2015)

A map of binding cavity conformations reveals differences in binding specificity. - Ziyi Guo; Brian Yuan Chen (BIBM, 2016)