Interoperability between Bioinformatics Tools: A Logic Programming Approach. - Juan Raymundo Iglesias; Gopal Gupta 001; Enrico Pontelli; Desh Ranjan; Brook Milligan (PADL, 2001)

F-LOG: A Domain Specific Language for Solving Phylogenetic Inference Problems. - Enrico Pontelli; Desh Ranjan; Brook Milligan; Gopal Gupta 001 (CSB, 2002)

Semantics-Based Filtering: Logic Programming's Killer App? - Gopal Gupta 001; Hai-Feng Guo; Arthur I. Karshmer; Enrico Pontelli; Juan Raymundo Iglesias; Desh Ranjan; Brook Milligan; Nayana Datta; Omar El-Khatib; Mohammed Noamany; Xinhong Zhou (PADL, 2002)

An Agent-based Domain Specific Framework for Rapid Prototyping of Applications in Evolutionary Biology. - Tran Cao Son; Enrico Pontelli; Desh Ranjan; Brook Milligan; Gopal Gupta 001 (DALT, 2003)

HighSSR: high-throughput SSR characterization and locus development from next-gen sequencing data. - Alexander G. Churbanov; Rachael Ryan; Nabeeh Hasan; Donovan Bailey; Haofeng Chen; Brook Milligan; Peter Houde (Bioinform., 2012)