Identifying tandem Ankyrin repeats in protein structures. - Broto Chakrabarty; Nita Parekh (BMC Bioinform., 2014)

PRIGSA: Protein repeat identification by graph spectral analysis. - Broto Chakrabarty; Nita Parekh (J. Bioinform. Comput. Biol., 2014)

NAPS: Network Analysis of Protein Structures. - Broto Chakrabarty; Nita Parekh (Nucleic Acids Res., 2016)

NAPS update: network analysis of molecular dynamics data and protein-nucleic acid complexes. - Broto Chakrabarty; Varun Naganathan; Kanak Garg; Yash Agarwal; Nita Parekh (Nucleic Acids Res., 2019)

Network-Based Analysis of Fatal Comorbidities of COVID-19 and Potential Therapeutics. - Broto Chakrabarty; Dibyajyoti Das; Gopalakrishnan Bulusu; Arijit Roy (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Gex2SGen: Designing Drug-like Molecules from Desired Gene Expression Signatures. - Dibyajyoti Das; Broto Chakrabarty; Rajgopal Srinivasan; Arijit Roy (J. Chem. Inf. Model., 2023)