RTNduals: an R/Bioconductor package for analysis of co-regulation and inference of dual regulons. - Vinicius S. Chagas; Clarice S. Groeneveld; Kelin G. Oliveira; Sheyla Trefflich; Rodrigo C. de Almeida; Bruce A. J. Ponder; Kerstin B. Meyer; Steven J. M. Jones; A. Gordon Robertson; Mauro A. A. Castro (Bioinform., 2019)

RTNsurvival: an R/Bioconductor package for regulatory network survival analysis. - Clarice S. Groeneveld; Vinicius S. Chagas; Steven J. M. Jones; A. Gordon Robertson; Bruce A. J. Ponder; Kerstin B. Meyer; Mauro A. A. Castro (Bioinform., 2019)

TreeAndLeaf: an R/Bioconductor package for graphs and trees with focus on the leaves. - Milena A. Cardoso; Luis E. A. Rizzardi; Leonardo W. Kume; Clarice S. Groeneveld; Sheyla Trefflich; Diego A. A. Morais; Rodrigo J. S. Dalmolin; Bruce A. J. Ponder; Kerstin B. Meyer; Mauro A. A. Castro (Bioinform., 2022)