Phylogenetic Dependency Networks: Inferring Patterns of CTL Escape and Codon Covariation in HIV-1 Gag. - Jonathan M. Carlson; Zabrina L. Brumme; Christine M. Rousseau; Chanson J. Brumme; Philippa Matthews; Carl Myers Kadie; James I. Mullins; Bruce D. Walker; P. Richard Harrigan; Philip J. R. Goulder; David Heckerman (PLoS Comput. Biol., 2008)

Statistical Resolution of Ambiguous HLA Typing Data. - Jennifer Listgarten; Zabrina L. Brumme; Carl Myers Kadie; Gao Xiaojiang; Bruce D. Walker; Mary Carrington; Philip J. R. Goulder; David Heckerman (PLoS Comput. Biol., 2008)

The Fitness Landscape of HIV-1 Gag: Advanced Modeling Approaches and Validation of Model Predictions by In Vitro Testing. - Jaclyn K. Mann; John P. Barton; Andrew L. Ferguson; Saleha Omarjee; Bruce D. Walker; Arup Chakraborty; Thumbi Ndung'u (PLoS Comput. Biol., 2014)