Learned adaptive nonlinear filtering for anisotropic diffusion approximation in image processing. - Bruce Fischl; Eric L. Schwartz (ICPR, 1996)

Fast Adaptive Alternatives to Nonlinear Diffusion in Image Enhancement: Green's Function Approximators and Nonlocal Filters. - Bruce Fischl; Eric L. Schwartz (Scale-Space, 1997)

The Local Structure of Space-variant Images. - Bruce Fischl; Michael A. Cohen; Eric L. Schwartz (Neural Networks, 1997)

Learning an Integral Equation Approximation to Nonlinear Anisotropic Diffusion in Image Processing. - Bruce Fischl; Eric L. Schwartz (IEEE Trans. Pattern Anal. Mach. Intell., 1997)

Rapid Anisotropic Diffusion Using Space-Variant Vision. - Bruce Fischl; Michael A. Cohen; Eric L. Schwartz (Int. J. Comput. Vis., 1998)

Adaptive Nonlocal Filtering: A Fast Alternative to Anisotropic Diffusion for Image Enhancement. - Bruce Fischl; Eric L. Schwartz (IEEE Trans. Pattern Anal. Mach. Intell., 1999)

Automated Manifold Surgery: Constructing Geometrically Accurate and Topologically Correct Models of the Human Cerebral Cortex. - Bruce Fischl; Arthur K. Liu; Anders M. Dale (IEEE Trans. Medical Imaging, 2001)

Discriminative Analysis for Image-Based Studies. - Polina Golland; Bruce Fischl; Mona Spiridon; Nancy Kanwisher; Randy L. Buckner; Martha Elizabeth Shenton; Ron Kikinis; Anders M. Dale; W. Eric L. Grimson (MICCAI (1), 2002)

Permutation Tests for Classification: Towards Statistical Significance in Image-Based Studies. - Polina Golland; Bruce Fischl (IPMI, 2003)

Topological Correction of Subcortical Segmentation. - Florent Ségonne; W. Eric L. Grimson; Bruce Fischl (MICCAI (2), 2003)

A hybrid approach to the skull stripping problem in MRI. - Florent Ségonne; Anders M. Dale; Evelina Busa; Maureen Glessner; David H. Salat; Horst Karl Hahn; Bruce Fischl (NeuroImage, 2004)

Active Contours Under Topology Control Genus Preserving Level Sets. - Florent Ségonne; Jean-Philippe Pons; W. Eric L. Grimson; Bruce Fischl (CVBIA, 2005)

A Genetic Algorithm for the Topology Correction of Cortical Surfaces. - Florent Ségonne; W. Eric L. Grimson; Bruce Fischl (IPMI, 2005)

On-line automatic slice positioning for brain MR imaging. - André J. W. van der Kouwe; Thomas Benner; Bruce Fischl; Franz Schmitt; David H. Salat; Martin Harder; A. Gregory Sorensen; Anders M. Dale (NeuroImage, 2005)

Cortical Surface Shape Analysis Based on Spherical Wavelet Transformation. - Peng Yu; Xiao Han; Florent Ségonne; Rudolph Pienaar; Randy L. Buckner; Polina Golland; Patricia Ellen Grant; Bruce Fischl (CVPR Workshops, 2006)

Shape-based Discrimination and Classification of Cortical Surfaces. - Peng Yu; Xiao Han; Florent Ségonne; Arthur K. Liu; Russell A. Poldrack; Polina Golland; Bruce Fischl (ICPR (3), 2006)

An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest. - Rahul Desikan; Florent Ségonne; Bruce Fischl; Brian T. Quinn; Bradford C. Dickerson; Deborah Blacker; Randy L. Buckner; Anders M. Dale; Ralph Paul Maguire; Bradley T. Hyman; Marilyn S. Albert; Ronald J. Killiany (NeuroImage, 2006)

Selective increase of cortical thickness in high-performing elderly - structural indices of optimal cognitive aging. - Anders M. Fjell; Kristine B. Walhovd; Ivar Reinvang; Arvid Lundervold; David H. Salat; Brian T. Quinn; Bruce Fischl; Anders M. Dale (NeuroImage, 2006)

Reliability of MRI-derived measurements of human cerebral cortical thickness: The effects of field strength, scanner upgrade and manufacturer. - Xiao Han; Jorge Jovicich; David H. Salat; André J. W. van der Kouwe; Brian T. Quinn; Silvester Czanner; Evelina Busa; Jenni Pacheco; Marilyn S. Albert; Ronald J. Killiany; Ralph Paul Maguire; H. Diana Rosas; et al. (NeuroImage, 2006)

Reliability in multi-site structural MRI studies: Effects of gradient non-linearity correction on phantom and human data. - Jorge Jovicich; Silvester Czanner; Douglas N. Greve; Elizabeth Haley; André J. W. van der Kouwe; Randy L. Gollub; David N. Kennedy; Franz Schmitt; Gregory Brown; James R. MacFall; Bruce Fischl; Anders M. Dale (NeuroImage, 2006)

Human cerebral cortex: A system for the integration of volume- and surface-based representations. - Nikos Makris; Jonathan Kaiser; Christian Haselgrove; Larry J. Seidman; Joseph Biederman; Denise Boriel; Eve M. Valera; George M. Papadimitriou; Bruce Fischl; Verne S. Caviness Jr.; David N. Kennedy (NeuroImage, 2006)

Detailed semiautomated MRI based morphometry of the neonatal brain: Preliminary results. - Mitsuhiro Nishida; Nikolaos Makris; David N. Kennedy; Mark G. Vangel; Bruce Fischl; Kalpathy S. Krishnamoorthy; Verne S. Caviness Jr.; Patricia Ellen Grant (NeuroImage, 2006)

Mapping an intrinsic MR property of gray matter in auditory cortex of living humans: A possible marker for primary cortex and hemispheric differences. - Irina S. Sigalovsky; Bruce Fischl; Jennifer Melcher (NeuroImage, 2006)

Regional cortical thickness matters in recall after months more than minutes. - Kristine B. Walhovd; Anders M. Fjell; Anders M. Dale; Bruce Fischl; Brian T. Quinn; Nikos Makris; David H. Salat; Ivar Reinvang (NeuroImage, 2006)

Detecting Cortical Surface Regions in Structural MR Data. - Biswajit Bose; John W. Fisher III; Bruce Fischl; Oliver Hinds; Eric Grimson (ICCV, 2007)

What Data to Co-register for Computing Atlases. - B. T. Thomas Yeo; Mert R. Sabuncu; Hartmut Mohlberg; Katrin Amunts; Karl Zilles; Polina Golland; Bruce Fischl (ICCV, 2007)

Cortical Folding Development Study based on Over-Complete Spherical Wavelets. - Peng Yu; B. T. Thomas Yeo; Patricia Ellen Grant; Bruce Fischl; Polina Golland (ICCV, 2007)

Geometry Driven Volumetric Registration. - Gheorghe Postelnicu; Lilla Zöllei; Rahul Desikan; Bruce Fischl (IPMI, 2007)

Reduced microstructural integrity of the white matter underlying anterior cingulate cortex is associated with increased saccadic latency in schizophrenia. - Dara S. Manoach; G. Avinash Ketwaroo; Frida E. Polli; Katharine N. Thakkar; Jason J. S. Barton; Donald C. Goff; Bruce Fischl; Mark G. Vangel; David S. Tuch (NeuroImage, 2007)

Volumetric cerebral characteristics of children exposed to opiates and other substances in utero. - Kristine B. Walhovd; Vibeke Moe; Kari Slinning; Paulina Due-Tønnessen; Atle Bjørnerud; Anders M. Dale; André J. W. van der Kouwe; Brian T. Quinn; Barry Kosofsky; Douglas N. Greve; Bruce Fischl (NeuroImage, 2007)

Feasibility of Multi-site Clinical Structural Neuroimaging Studies of Aging Using Legacy Data. - Christine Fennema-Notestine; Anthony Collins Gamst; Brian T. Quinn; Jenni Pacheco; Terry L. Jernigan; Leon Thal; Randy L. Buckner; Ron Killiany; Deborah Blacker; Anders M. Dale; Bruce Fischl; Bradford C. Dickerson; et al. (Neuroinformatics, 2007)

Atlas Renormalization for Improved Brain MR Image Segmentation Across Scanner Platforms. - Xiao Han; Bruce Fischl (IEEE Trans. Medical Imaging, 2007)

Geometrically Accurate Topology-Correction of Cortical Surfaces Using Nonseparating Loops. - Florent Ségonne; Jenni Pacheco; Bruce Fischl (IEEE Trans. Medical Imaging, 2007)

Cortical Surface Shape Analysis Based on Spherical Wavelets. - Peng Yu; Patricia Ellen Grant; Yuan Qi; Xiao Han; Florent Ségonne; Rudolph Pienaar; Evelina Busa; Jenni Pacheco; Nikos Makris; Randy L. Buckner; Polina Golland; Bruce Fischl (IEEE Trans. Medical Imaging, 2007)

Model-Based Segmentation of Hippocampal Subfields in Ultra-High Resolution In Vivo MRI. - Koen Van Leemput; Akram Bakkour; Thomas Benner; Graham C. Wiggins; Lawrence L. Wald; Jean Augustinack; Bradford C. Dickerson; Polina Golland; Bruce Fischl (MICCAI (1), 2008)

Spherical Demons: Fast Surface Registration. - B. T. Thomas Yeo; Mert R. Sabuncu; Tom Vercauteren; Nicholas Ayache; Bruce Fischl; Polina Golland (MICCAI (1), 2008)

Shape Analysis with Overcomplete Spherical Wavelets. - B. T. Thomas Yeo; Peng Yu; Patricia Ellen Grant; Bruce Fischl; Polina Golland (MICCAI (1), 2008)

A methodology for analyzing curvature in the developing brain from preterm to adult. - Rudolph Pienaar; Bruce Fischl; Verne S. Caviness Jr.; Nikos Makris; Patricia Ellen Grant (Int. J. Imaging Syst. Technol., 2008)

Effects of registration regularization and atlas sharpness on segmentation accuracy. - B. T. Thomas Yeo; Mert R. Sabuncu; Rahul Desikan; Bruce Fischl; Polina Golland (Medical Image Anal., 2008)

Detection of cortical thickness correlates of cognitive performance: Reliability across MRI scan sessions, scanners, and field strengths. - Bradford C. Dickerson; E. Fenstermacher; David H. Salat; David A. Wolk; Ralph Paul Maguire; Rahul Desikan; Jennifer L. Pacheco; Brian T. Quinn; André J. W. van der Kouwe; Douglas N. Greve; Deborah Blacker; Marilyn S. Albert; et al. (NeuroImage, 2008)

The relationship between diffusion tensor imaging and volumetry as measures of white matter properties. - Anders M. Fjell; Lars T. Westlye; Douglas N. Greve; Bruce Fischl; Thomas Benner; André J. W. van der Kouwe; David H. Salat; Atle Bjørnerud; Paulina Due-Tønnessen; Kristine B. Walhovd (NeuroImage, 2008)

Accurate prediction of V1 location from cortical folds in a surface coordinate system. - Oliver Hinds; Niranjini Rajendran; Jonathan R. Polimeni; Jean C. Augustinack; Graham C. Wiggins; Lawrence L. Wald; H. Diana Rosas; Andreas Potthast; Eric L. Schwartz; Bruce Fischl (NeuroImage, 2008)

Brain morphometry with multiecho MPRAGE. - André J. W. van der Kouwe; Thomas Benner; David H. Salat; Bruce Fischl (NeuroImage, 2008)

Corrigendum to "Volumetric cerebral characteristics of children exposed to opiates and other substances in utero" [NeuroImage 36 (2007) 1331-1344]. - Kristine B. Walhovd; Vibeke Moe; Kari Slinning; Paulina Due-Tønnessen; Atle Bjørnerud; Anders M. Dale; André J. W. van der Kouwe; Brian T. Quinn; Barry Kosofsky; Douglas N. Greve; Bruce Fischl (NeuroImage, 2008)

Anatomical Priors for Global Probabilistic Diffusion Tractography. - Anastasia Yendiki; Allison Stevens; Jean Augustinack; David H. Salat; Lilla Zöllei; Bruce Fischl (ISBI, 2009)

Supervised Nonparametric Image Parcellation. - Mert R. Sabuncu; B. T. Thomas Yeo; Koen Van Leemput; Bruce Fischl; Polina Golland (MICCAI (1), 2009)

Task-Optimal Registration Cost Functions. - B. T. Thomas Yeo; Mert R. Sabuncu; Polina Golland; Bruce Fischl (MICCAI (1), 2009)

Target-specific contrast agents for magnetic resonance microscopy. - Megan L. Blackwell; Christian T. Farrar; Bruce Fischl; Bruce R. Rosen (NeuroImage, 2009)

Cognitive function and brain structure correlations in healthy elderly East Asians. - Michael W. L. Chee; Karren H. M. Chen; Hui Zheng; Karen P. L. Chan; Vivian Isaac; Sam K. Y. Sim; Lisa Y. M. Chuah; Maria Schuchinsky; Bruce Fischl; Tze Pin Ng (NeuroImage, 2009)

Predicting the location of entorhinal cortex from MRI. - Bruce Fischl; Allison Stevens; Niranjini Rajendran; B. T. Thomas Yeo; Douglas N. Greve; Koen Van Leemput; Jonathan R. Polimeni; Sita Kakunoori; Randy L. Buckner; Jennifer L. Pacheco; David H. Salat; Jennifer Melcher; et al. (NeuroImage, 2009)

Accurate and robust brain image alignment using boundary-based registration. - Douglas N. Greve; Bruce Fischl (NeuroImage, 2009)

Locating the functional and anatomical boundaries of human primary visual cortex. - Oliver Hinds; Jonathan R. Polimeni; Niranjini Rajendran; Mukund Balasubramanian; Katrin Amunts; Karl Zilles; Eric L. Schwartz; Bruce Fischl; Christina Triantafyllou (NeuroImage, 2009)

MRI-derived measurements of human subcortical, ventricular and intracranial brain volumes: Reliability effects of scan sessions, acquisition sequences, data analyses, scanner upgrade, scanner vendors and field strengths. - Jorge Jovicich; Silvester Czanner; Xiao Han; David H. Salat; André J. W. van der Kouwe; Brian T. Quinn; Jenni Pacheco; Marilyn S. Albert; Ronald J. Killiany; Deborah Blacker; Ralph Paul Maguire; H. Diana Rosas; et al. (NeuroImage, 2009)

Regional white matter volume differences in nondemented aging and Alzheimer's disease. - David H. Salat; Douglas N. Greve; Jennifer L. Pacheco; Brian T. Quinn; Karl G. Helmer; Randy L. Buckner; Bruce Fischl (NeuroImage, 2009)

Age-associated alterations in cortical gray and white matter signal intensity and gray to white matter contrast. - David H. Salat; Stephanie Y. Lee; André J. W. van der Kouwe; Douglas N. Greve; Bruce Fischl; H. Diana Rosas (NeuroImage, 2009)

Increased sensitivity to effects of normal aging and Alzheimer's disease on cortical thickness by adjustment for local variability in gray/white contrast: A multi-sample MRI study. - Lars T. Westlye; Kristine B. Walhovd; Anders M. Dale; Thomas Espeseth; Ivar Reinvang; Naftali Raz; Ingrid Agartz; Douglas N. Greve; Bruce Fischl; Anders M. Fjell (NeuroImage, 2009)

Combined Volumetric and Surface Registration. - Gheorghe Postelnicu; Lilla Zöllei; Bruce Fischl (IEEE Trans. Medical Imaging, 2009)

Anatomical atlas-guided diffuse optical tomography of brain activation. - Anna Custo; David A. Boas; Daisuke Tsuzuki; Ippeita Dan; Rickson Mesquita; Bruce Fischl; W. Eric L. Grimson; William M. Wells III (NeuroImage, 2010)

Automatic parcellation of human cortical gyri and sulci using standard anatomical nomenclature. - Christophe Destrieux; Bruce Fischl; Anders M. Dale; Eric Halgren (NeuroImage, 2010)

Evaluating the validity of volume-based and surface-based brain image registration for developmental cognitive neuroscience studies in children 4 to 11 years of age. - Satrajit S. Ghosh; Sita Kakunoori; Jean Augustinack; Alfonso Nieto-Castañón; Ioulia Kovelman; Nadine Gaab; Joanna A. Christodoulou; Christina Triantafyllou; John D. E. Gabrieli; Bruce Fischl (NeuroImage, 2010)

Evaluation of volume-based and surface-based brain image registration methods. - Arno Klein; Satrajit S. Ghosh; Brian B. Avants; B. T. Thomas Yeo; Bruce Fischl; Babak A. Ardekani; James C. Gee; J. John Mann; Ramin V. Parsey (NeuroImage, 2010)

Salivary cortisol and prefrontal cortical thickness in middle-aged men: A twin study. - William S. Kremen; Robert C. O'Brien; Matthew S. Panizzon; Elizabeth Prom-Wormley; Lindon J. Eaves; Seth A. Eisen; Lisa T. Eyler; Richard L. Hauger; Christine Fennema-Notestine; Bruce Fischl; Michael D. Grant; Dirk H. Hellhammer; et al. (NeuroImage, 2010)

Genetic and environmental influences on the size of specific brain regions in midlife: The VETSA MRI study. - William S. Kremen; Elizabeth Prom-Wormley; Matthew S. Panizzon; Lisa T. Eyler; Bruce Fischl; Michael C. Neale; Carol E. Franz; Michael J. Lyons 002; Jennifer L. Pacheco; Michele E. Perry; Allison Stevens; J. Eric Schmitt; et al. (NeuroImage, 2010)

Corrigendum to "Genetic and environmental influences on the size of specific brain regions in midlife: The VETSA MRI study": [NeuroImage 49 (2010) 1213-1223]. - William S. Kremen; Elizabeth Prom-Wormley; Matthew S. Panizzon; Lisa T. Eyler; Bruce Fischl; Michael C. Neale; Carol E. Franz; Michael J. Lyons 002; Jennifer L. Pacheco; Michele E. Perry; Allison Stevens; J. Eric Schmitt; et al. (NeuroImage, 2010)

Laminar analysis of 7 T BOLD using an imposed spatial activation pattern in human V1. - Jonathan R. Polimeni; Bruce Fischl; Douglas N. Greve; Lawrence L. Wald (NeuroImage, 2010)

Highly accurate inverse consistent registration: A robust approach. - Martin Reuter 001; H. Diana Rosas; Bruce Fischl (NeuroImage, 2010)

Altered white matter microstructure in the corpus callosum in Huntington's disease: Implications for cortical "disconnection". - H. Diana Rosas; Stephanie Y. Lee; Alexander C. Bender; Alexandra K. Zaleta; Mark G. Vangel; Peng Yu; Bruce Fischl; Vasanth Pappu; Christina E. Onorato; Jang-Ho Cha; David H. Salat; Steven M. Hersch (NeuroImage, 2010)

Improved tractography alignment using combined volumetric and surface registration. - Lilla Zöllei; Allison Stevens; Kristen Huber; Sita Kakunoori; Bruce Fischl (NeuroImage, 2010)

Atlas Generation for Subcortical and Ventricular Structures With Its Applications in Shape Analysis. - Anqi Qiu; Timothy Brown; Bruce Fischl; Jun Ma; Michael I. Miller (IEEE Trans. Image Process., 2010)

A Generative Model for Image Segmentation Based on Label Fusion. - Mert R. Sabuncu; B. T. Thomas Yeo; Koenraad Van Leemput; Bruce Fischl; Polina Golland (IEEE Trans. Medical Imaging, 2010)

Spherical Demons: Fast Diffeomorphic Landmark-Free Surface Registration. - B. T. Thomas Yeo; Mert R. Sabuncu; Tom Vercauteren; Nicholas Ayache; Bruce Fischl; Polina Golland (IEEE Trans. Medical Imaging, 2010)

Learning Task-Optimal Registration Cost Functions for Localizing Cytoarchitecture and Function in the Cerebral Cortex. - B. T. Thomas Yeo; Mert R. Sabuncu; Tom Vercauteren; Daphne J. Holt; Katrin Amunts; Karl Zilles; Polina Golland; Bruce Fischl (IEEE Trans. Medical Imaging, 2010)

Atlas-based segmentation for globus pallidus internus targeting on low-resolution MRI. - Maria Ida Iacono; Nikos Makris; Luca T. Mainardi; John T. Gale; André J. W. van der Kouwe; Azma Mareyam; Jonathan R. Polimeni; Lawrence L. Wald; Bruce Fischl; Emad N. Eskandar; Giorgio Bonmassar (EMBC, 2011)

Automated Probabilistic Reconstruction of White-Matter Pathways in Health and Disease Using an Atlas of the Underlying Anatomy. - Anastasia Yendiki; Patricia Panneck; Priti Srinivasan; Allison Stevens; Lilla Zöllei; Jean Augustinack; Ruopeng Wang; David H. Salat; Stefan Ehrlich; Tim E. J. Behrens; Saâd Jbabdi; Randy L. Gollub; et al. (Frontiers Neuroinformatics, 2011)

In vivo evidence of disseminated subpial T2* signal changes in multiple sclerosis at 7 T: A surface-based analysis. - Julien Cohen-Adad; Thomas Benner; Douglas N. Greve; R. P. Kinkel; A. Radding; Bruce Fischl; Bruce R. Rosen; Caterina Mainero (NeuroImage, 2011)

Thickness of the human cerebral cortex is associated with metrics of cerebrovascular health in a normative sample of community dwelling older adults. - Elizabeth C. Leritz; David H. Salat; Victoria J. Williams; David M. Schnyer; James L. Rudolph; Lewis A. Lipsitz; Bruce Fischl; Regina E. McGlinchey; William P. Milberg (NeuroImage, 2011)

Avoiding asymmetry-induced bias in longitudinal image processing. - Martin Reuter 001; Bruce Fischl (NeuroImage, 2011)

Hippocampal degeneration is associated with temporal and limbic gray matter/white matter tissue contrast in Alzheimer's disease. - David H. Salat; J. Jean Chen; André J. W. van der Kouwe; Douglas N. Greve; Bruce Fischl; H. Diana Rosas (NeuroImage, 2011)

Connectivity-based segmentation of human amygdala nuclei using probabilistic tractography. - Zeynep M. Saygin; David E. Osher; Jean Augustinack; Bruce Fischl; John D. E. Gabrieli (NeuroImage, 2011)

Validating atlas-guided DOT: A comparison of diffuse optical tomography informed by atlas and subject-specific anatomies. - Robert J. Cooper; Matteo Caffini; Jay Dubb; Qianqian Fang; Anna Custo; Daisuke Tsuzuki; Bruce Fischl; William M. Wells III; Ippeita Dan; David A. Boas (NeuroImage, 2012)

FreeSurfer. - Bruce Fischl (NeuroImage, 2012)

Genetic and environmental influences of white and gray matter signal contrast: A new phenotype for imaging genetics? - Matthew S. Panizzon; Christine Fennema-Notestine; Thomas S. Kubarych; Chi-Hua Chen; Lisa T. Eyler; Bruce Fischl; Carol E. Franz; Michael D. Grant; Samar Hamza; Amy J. Jak; Terry L. Jernigan; Michael J. Lyons 002; et al. (NeuroImage, 2012)

Genetic influences on hippocampal volume differ as a function of testosterone level in middle-aged men. - Matthew S. Panizzon; Richard L. Hauger; Lindon J. Eaves; Chi-Hua Chen; Anders M. Dale; Lisa T. Eyler; Bruce Fischl; Christine Fennema-Notestine; Carol E. Franz; Michael D. Grant; Kristen C. Jacobson; Amy J. Jak; et al. (NeuroImage, 2012)

Within-subject template estimation for unbiased longitudinal image analysis. - Martin Reuter 001; Nicholas J. Schmansky; H. Diana Rosas; Bruce Fischl (NeuroImage, 2012)

Measuring and comparing brain cortical surface area and other areal quantities. - Anderson M. Winkler; Mert R. Sabuncu; B. T. Thomas Yeo; Bruce Fischl; Douglas N. Greve; Peter V. Kochunov; Thomas E. Nichols; John Blangero; David C. Glahn (NeuroImage, 2012)

Symmetric non-rigid image registration via an adaptive quasi-volume-preserving constraint. - Iman Aganj; Martin Reuter 001; Mert R. Sabuncu; Bruce Fischl (ISBI, 2013)

Is Synthesizing MRI Contrast Useful for Inter-modality Analysis? - Juan Eugenio Iglesias; Ender Konukoglu; Darko Zikic; Ben Glocker; Koen Van Leemput; Bruce Fischl (MICCAI (1), 2013)

Example-Based Restoration of High-Resolution Magnetic Resonance Image Acquisitions. - Ender Konukoglu; André J. W. van der Kouwe; Mert Rory Sabuncu; Bruce Fischl (MICCAI (1), 2013)

A Surface-based Analysis of Language Lateralization and Cortical Asymmetry. - Douglas N. Greve; Lise Van der Haegen; Qing Cai; Steven M. Stufflebeam; Mert R. Sabuncu; Bruce Fischl; Marc Brysbaert (J. Cogn. Neurosci., 2013)

Predicting the location of human perirhinal cortex, Brodmann's area 35, from MRI. - Jean Augustinack; Kristen Huber; Allison Stevens; Michelle Roy; Matthew P. Frosch; André J. W. van der Kouwe; Lawrence L. Wald; Koen Van Leemput; Ann C. McKee; Bruce Fischl (NeuroImage, 2013)

Statistical analysis of longitudinal neuroimage data with Linear Mixed Effects models. - Jorge L. Bernal-Rusiel; Douglas N. Greve; Martin Reuter 001; Bruce Fischl; Mert R. Sabuncu (NeuroImage, 2013)

Spatiotemporal linear mixed effects modeling for the mass-univariate analysis of longitudinal neuroimage data. - Jorge L. Bernal-Rusiel; Martin Reuter 001; Douglas N. Greve; Bruce Fischl; Mert R. Sabuncu (NeuroImage, 2013)

The minimal preprocessing pipelines for the Human Connectome Project. - Matthew F. Glasser; Stamatios N. Sotiropoulos; J. Anthony Wilson; Timothy S. Coalson; Bruce Fischl; Jesper L. R. Andersson; Junqian Xu; Saâd Jbabdi; Matthew A. Webster; Jonathan R. Polimeni; David C. Van Essen; Mark Jenkinson (NeuroImage, 2013)

Radial and tangential neuronal migration pathways in the human fetal brain: Anatomically distinct patterns of diffusion MRI coherence. - James Kolasinski; Emi Takahashi; Allison Stevens; Thomas Benner; Bruce Fischl; Lilla Zöllei; Patricia Ellen Grant (NeuroImage, 2013)

On Removing Interpolation and Resampling Artifacts in Rigid Image Registration. - Iman Aganj; B. T. Thomas Yeo; Mert R. Sabuncu; Bruce Fischl (IEEE Trans. Image Process., 2013)

Conceptual and Data-based Investigation of Genetic Influences and Brain Asymmetry: A Twin Study of Multiple Structural Phenotypes. - Lisa T. Eyler; Eero Vuoksimaa; Matthew S. Panizzon; Christine Fennema-Notestine; Michael C. Neale; Chi-Hua Chen; Amy J. Jak; Carol E. Franz; Michael J. Lyons 002; Wesley K. Thompson; Kelly M. Spoon; Bruce Fischl; et al. (J. Cogn. Neurosci., 2014)

MRI parcellation of ex vivo medial temporal lobe. - Jean C. Augustinack; Caroline Magnain; Martin Reuter 001; André J. W. van der Kouwe; David A. Boas; Bruce Fischl (NeuroImage, 2014)

Quantitative comparison of cortical surface reconstructions from MP2RAGE and multi-echo MPRAGE data at 3 and 7 T. - Kyoko Fujimoto; Jonathan R. Polimeni; André J. W. van der Kouwe; Martin Reuter 001; Tobias Kober; Thomas Benner; Bruce Fischl; Lawrence L. Wald (NeuroImage, 2014)

Cortical surface-based analysis reduces bias and variance in kinetic modeling of brain PET data. - Douglas N. Greve; Claus Svarer; Patrick M. Fisher; Ling Feng; Adam Espe Hansen; William F. C. Baaré; Bruce R. Rosen; Bruce Fischl; Gitte Moos Knudsen (NeuroImage, 2014)

Blockface histology with optical coherence tomography: A comparison with Nissl staining. - Caroline Magnain; Jean Augustinack; Martin Reuter 001; Christian Wachinger; Matthew P. Frosch; Timothy Ragan; Taner Akkin; Van J. Wedeen; David A. Boas; Bruce Fischl (NeuroImage, 2014)

Event time analysis of longitudinal neuroimage data. - Mert R. Sabuncu; Jorge L. Bernal-Rusiel; Martin Reuter 001; Douglas N. Greve; Bruce Fischl (NeuroImage, 2014)

Cross-validation of serial optical coherence scanning and diffusion tensor imaging: A study on neural fiber maps in human medulla oblongata. - Hui Wang 060; Junfeng Zhu; Martin Reuter 001; Louis N. Vinke; Anastasia Yendiki; David A. Boas; Bruce Fischl; Taner Akkin (NeuroImage, 2014)

Localizing the human primary auditory cortex in vivo using structural MRI. - Christian Wasserthal; André Brechmann; Jörg Stadler; Bruce Fischl; Karin Engel (NeuroImage, 2014)

Spurious group differences due to head motion in a diffusion MRI study. - Anastasia Yendiki; Kami Koldewyn; Sita Kakunoori; Nancy Kanwisher; Bruce Fischl (NeuroImage, 2014)

Mid-Space-Independent Symmetric Data Term for Pairwise Deformable Image Registration. - Iman Aganj; Juan Eugenio Iglesias; Martin Reuter 001; Mert R. Sabuncu; Bruce Fischl (MICCAI (2), 2015)

Avoiding symmetry-breaking spatial non-uniformity in deformable image registration via a quasi-volume-preserving constraint. - Iman Aganj; Martin Reuter 001; Mert R. Sabuncu; Bruce Fischl (NeuroImage, 2015)

Corrigendum to "Statistical analysis of longitudinal neuroimage data with Linear Mixed Effects models" [NeuroImage 66 (1 February 2013) 249-260]. - Jorge L. Bernal-Rusiel; Douglas N. Greve; Martin Reuter 001; Bruce Fischl; Mert R. Sabuncu (NeuroImage, 2015)

Corrigendum to "Spatiotemporal linear mixed effects modeling for the mass-univariate analysis of longitudinal neuroimage data" [NeuroImage 81 (1 November 2013) 358-370]. - Jorge L. Bernal-Rusiel; Martin Reuter 001; Douglas N. Greve; Bruce Fischl; Mert R. Sabuncu (NeuroImage, 2015)

Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge. - David M. Cash; Chris Frost 001; Leonardo O. Iheme; Devrim Ünay; Melek Kandemir; Jurgen Fripp; Olivier Salvado; Pierrick Bourgeat; Martin Reuter 001; Bruce Fischl; Marco Lorenzi; Giovanni B. Frisoni; et al. (NeuroImage, 2015)

Relevant feature set estimation with a knock-out strategy and random forests. - Melanie Ganz; Douglas N. Greve; Bruce Fischl; Ender Konukoglu (NeuroImage, 2015)

A computational atlas of the hippocampal formation using ex vivo, ultra-high resolution MRI: Application to adaptive segmentation of in vivo MRI. - Juan Eugenio Iglesias; Jean C. Augustinack; Khoa Nguyen; Christopher M. Player; Allison Player; Michelle Wright; Nicole Roy; Matthew P. Frosch; Ann C. McKee; Lawrence L. Wald; Bruce Fischl; Koen Van Leemput (NeuroImage, 2015)

Bayesian segmentation of brainstem structures in MRI. - Juan Eugenio Iglesias; Koen Van Leemput; Priyanka Bhatt; Christen Casillas; Shubir Dutt; Norbert Schuff; Diana Truran-Sacrey; Adam L. Boxer; Bruce Fischl (NeuroImage, 2015)

An algorithm for optimal fusion of atlases with different labeling protocols. - Juan Eugenio Iglesias; Mert Rory Sabuncu; Iman Aganj; Priyanka Bhatt; Christen Casillas; David H. Salat; Adam L. Boxer; Bruce Fischl; Koen Van Leemput (NeuroImage, 2015)

Head motion during MRI acquisition reduces gray matter volume and thickness estimates. - Martin Reuter 001; M. Dylan Tisdall; Abid Y. Qureshi; Randy L. Buckner; André J. W. van der Kouwe; Bruce Fischl (NeuroImage, 2015)

Corrigendum to "Event time analysis of longitudinal neuroimage data" [NeuroImage 97 (15 August 2014) 9-18]. - Mert R. Sabuncu; Jorge L. Bernal-Rusiel; Martin Reuter 001; Douglas N. Greve; Bruce Fischl (NeuroImage, 2015)

Gray matter myelination of 1555 human brains using partial volume corrected MRI images. - Rebecca Shafee; Randy L. Buckner; Bruce Fischl (NeuroImage, 2015)

BrainPrint: A discriminative characterization of brain morphology. - Christian Wachinger; Polina Golland; William S. Kremen; Bruce Fischl; Martin Reuter 001 (NeuroImage, 2015)

A Fast Approach to Automatic Detection of Brain Lesions. - Subhranil Koley; Chandan Chakraborty; Caterina Mainero; Bruce Fischl; Iman Aganj (BrainLes@MICCAI, 2016)

Hierarchical Clustering of Tractography Streamlines Based on Anatomical Similarity. - Viviana Siless; Ken Chang; Bruce Fischl; Anastasia Yendiki (MICCAI (1), 2016)

Bayesian longitudinal segmentation of hippocampal substructures in brain MRI using subject-specific atlases. - Juan Eugenio Iglesias; Koen Van Leemput; Jean Augustinack; Ricardo Insausti; Bruce Fischl; Martin Reuter 001 (NeuroImage, 2016)

Multivariate statistical analysis of diffusion imaging parameters using partial least squares: Application to white matter variations in Alzheimer's disease. - Ender Konukoglu; Jean-Philippe Coutu; David H. Salat; Bruce Fischl (NeuroImage, 2016)

Prospective motion correction with volumetric navigators (vNavs) reduces the bias and variance in brain morphometry induced by subject motion. - M. Dylan Tisdall; Martin Reuter 001; Abid Y. Qureshi; Randy L. Buckner; Bruce Fischl; André J. W. van der Kouwe (NeuroImage, 2016)

Joint reconstruction of white-matter pathways from longitudinal diffusion MRI data with anatomical priors. - Anastasia Yendiki; Martin Reuter 001; Paul Wilkens; H. Diana Rosas; Bruce Fischl (NeuroImage, 2016)

Functional density and edge maps: Characterizing functional architecture in individuals and improving cross-subject registration. - Tong Tong 001; Iman Aganj; Tian Ge; Jonathan R. Polimeni; Bruce Fischl (NeuroImage, 2017)

Mid-space-independent deformable image registration. - Iman Aganj; Juan Eugenio Iglesias; Martin Reuter 001; Mert Rory Sabuncu; Bruce Fischl (NeuroImage, 2017)

High-resolution magnetic resonance imaging reveals nuclei of the human amygdala: manual segmentation to automatic atlas. - Zeynep M. Saygin; Dorit Kliemann; Juan Eugenio Iglesias; André J. W. van der Kouwe; Ellen Boyd; Martin Reuter 001; Allison Stevens; Koenraad Van Leemput; Alexis McKee; Matthew P. Frosch; Bruce Fischl; Jean C. Augustinack (NeuroImage, 2017)

Multimodal Image Registration Through Simultaneous Segmentation. - Iman Aganj; Bruce Fischl (IEEE Signal Process. Lett., 2017)

Model-Based Refinement of Nonlinear Registrations in 3D Histology Reconstruction. - Juan Eugenio Iglesias; Marco Lorenzi; Sebastiano Ferraris; Loïc Peter; Marc Modat; Allison Stevens; Bruce Fischl; Tom Vercauteren (MICCAI (2), 2018)

Pulse Sequence Resilient Fast Brain Segmentation. - Amod Jog; Bruce Fischl (MICCAI (3), 2018)

A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology. - Juan Eugenio Iglesias; Ricardo Insausti; Garikoitz Lerma-Usabiaga; Martina Bocchetta; Koen Van Leemput; Douglas N. Greve; André J. W. van der Kouwe; Bruce Fischl; César Caballero-Gaudes; Pedro M. Paz-Alonso (CoRR, 2018)

Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections. - Juan Eugenio Iglesias; Marc Modat; Loïc Peter; Allison Stevens; Roberto Annunziata; Tom Vercauteren; Ed S. Lein; Bruce Fischl; Sébastien Ourselin (Medical Image Anal., 2018)

A probabilistic template of human mesopontine tegmental nuclei from in vivo 7 T MRI. - Marta Bianciardi; Christian Strong; Nicola Toschi; Brian L. Edlow; Bruce Fischl; Emery N. Brown; Bruce R. Rosen; Lawrence L. Wald (NeuroImage, 2018)

Microstructural parcellation of the human brain. - Bruce Fischl; Martin I. Sereno (NeuroImage, 2018)

False positive rates in surface-based anatomical analysis. - Douglas N. Greve; Bruce Fischl (NeuroImage, 2018)

A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology. - Juan Eugenio Iglesias; Ricardo Insausti; Garikoitz Lerma-Usabiaga; Martina Bocchetta; Koen Van Leemput; Douglas N. Greve; André J. W. van der Kouwe; Bruce Fischl; César Caballero-Gaudes; Pedro M. Paz-Alonso (NeuroImage, 2018)

Analysis strategies for high-resolution UHF-fMRI data. - Jonathan R. Polimeni; Ville Renvall; Natalia Zaretskaya; Bruce Fischl (NeuroImage, 2018)

AnatomiCuts: Hierarchical clustering of tractography streamlines based on anatomical similarity. - Viviana Siless; Ken Chang; Bruce Fischl; Anastasia Yendiki (NeuroImage, 2018)

as-PSOCT: Volumetric microscopic imaging of human brain architecture and connectivity. - Hui Wang 060; Caroline Magnain; Ruopeng Wang; Jay Dubb; Ani Varjabedian; Lee S. Tirrell; Allison Stevens; Jean C. Augustinack; Ender Konukoglu; Iman Aganj; Matthew P. Frosch; Jeremy D. Schmahmann; et al. (NeuroImage, 2018)

Advantages of cortical surface reconstruction using submillimeter 7 T MEMPRAGE. - Natalia Zaretskaya; Bruce Fischl; Martin Reuter 001; Ville Renvall; Jonathan R. Polimeni (NeuroImage, 2018)

Detecting Structural Brain Connectivity Differences in Dementia Through a Conductance Model. - Aina Frau-Pascual; Jean Augustinack; Divya Varadarajan; Anastasia Yendiki; Bruce Fischl; Iman Aganj (ACSSC, 2019)

Expected Label Value Computation for Atlas-Based Image Segmentation. - Iman Aganj; Bruce Fischl (ISBI, 2019)

Unsupervised Deep Learning for Bayesian Brain MRI Segmentation. - Adrian V. Dalca; Evan M. Yu; Polina Golland; Bruce Fischl; Mert R. Sabuncu; Juan Eugenio Iglesias (MICCAI (3), 2019)

Fast Infant MRI Skullstripping with Multiview 2D Convolutional Neural Networks. - Amod Jog; Patricia Ellen Grant; Joseph L. Jacobson; André J. W. van der Kouwe; Ernesta M. Meintjes; Bruce Fischl; Lilla Zöllei (CoRR, 2019)

Intracortical smoothing of small-voxel fMRI data can provide increased detection power without spatial resolution losses compared to conventional large-voxel fMRI data. - Anna I. Blazejewska; Bruce Fischl; Lawrence L. Wald; Jonathan R. Polimeni (NeuroImage, 2019)

The Lifespan Human Connectome Project in Aging: An overview. - Susan Y. Bookheimer; David H. Salat; Melissa Terpstra; Beau M. Ances; Deanna M. Barch; Randy L. Buckner; Gregory C. Burgess; Sandra W. Curtiss; Mirella Diaz-Santos; Jennifer Stine Elam; Bruce Fischl; Douglas N. Greve; et al. (NeuroImage, 2019)

Representational similarity precedes category selectivity in the developing ventral visual pathway. - Michael A. Cohen; Daniel D. Dilks; Kami Koldewyn; Sarah Weigelt; Jenelle Feather; Alexander J. E. Kell; Boris Keil; Bruce Fischl; Lilla Zöllei; Lawrence L. Wald; Rebecca Saxe; Nancy Kanwisher (NeuroImage, 2019)

Quantification of structural brain connectivity via a conductance model. - Aina Frau-Pascual; Morgan Fogarty; Bruce Fischl; Anastasia Yendiki; Iman Aganj (NeuroImage, 2019)

PSACNN: Pulse sequence adaptive fast whole brain segmentation. - Amod Jog; Andrew Hoopes; Douglas N. Greve; Koen Van Leemput; Bruce Fischl (NeuroImage, 2019)

Abstract: FastSurfer. - Leonie Henschel; Sailesh Conjeti; Santiago Estrada; Kersten Diers; Bruce Fischl; Martin Reuter 001 (Bildverarbeitung für die Medizin, 2020)

Compensatory Brain Connection Discovery in Alzheimer's Disease. - Iman Aganj; Aina Frau-Pascual; Juan Eugenio Iglesias; Anastasia Yendiki; Jean C. Augustinack; David H. Salat; Bruce Fischl (ISBI, 2020)

3D Reconstruction and Segmentation of Dissection Photographs for MRI-Free Neuropathology. - Henry F. J. Tregidgo; Adrià Casamitjana; Caitlin Latimer; Mitchell Kilgore; Eleanor D. Robinson; Emily Blackburn; Koen Van Leemput; Bruce Fischl; Adrian V. Dalca; Christine L. Mac Donald; Dirk Keene; Juan Eugenio Iglesias (MICCAI (5), 2020)

A Learning Strategy for Contrast-agnostic MRI Segmentation. - Benjamin Billot; Douglas N. Greve; Koen Van Leemput; Bruce Fischl; Juan Eugenio Iglesias; Adrian V. Dalca (MIDL, 2020)

Cortical surface registration using unsupervised learning. - Jieyu Cheng; Adrian V. Dalca; Bruce Fischl; Lilla Zöllei (CoRR, 2020)

Learning Multi-Modal Image Registration without Real Data. - Malte Hoffmann; Benjamin Billot; Juan Eugenio Iglesias; Bruce Fischl; Adrian V. Dalca (CoRR, 2020)

Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast. - Juan Eugenio Iglesias; Benjamin Billot; Yaël Balbastre; Azadeh Tabari; John Conklin; Daniel C. Alexander; Polina Golland; Brian L. Edlow; Bruce Fischl (CoRR, 2020)

Test-retest reliability of FreeSurfer automated hippocampal subfield segmentation within and across scanners. - Emma M. Brown; Meghan E. Pierce; Dustin C. Clark; Bruce R. Fischl; Juan Eugenio Iglesias; William P. Milberg; Regina E. McGlinchey; David H. Salat (NeuroImage, 2020)

Cortical surface registration using unsupervised learning. - Jieyu Cheng; Adrian V. Dalca; Bruce Fischl; Lilla Zöllei; Alzheimer's Disease Neuroimaging Initiative (NeuroImage, 2020)

FastSurfer - A fast and accurate deep learning based neuroimaging pipeline. - Leonie Henschel; Sailesh Conjeti; Santiago Estrada; Kersten Diers; Bruce Fischl; Martin Reuter 001 (NeuroImage, 2020)

Insight into the fundamental trade-offs of diffusion MRI from polarization-sensitive optical coherence tomography in ex vivo human brain. - Robert Jones; Giorgia Grisot; Jean Augustinack; Caroline Magnain; David A. Boas; Bruce Fischl; Hui Wang 060; Anastasia Yendiki (NeuroImage, 2020)

Infant FreeSurfer: An automated segmentation and surface extraction pipeline for T1-weighted neuroimaging data of infants 0-2 years. - Lilla Zöllei; Juan Eugenio Iglesias; Yangming Ou; Patricia Ellen Grant; Bruce Fischl (NeuroImage, 2020)

HyperMorph: Amortized Hyperparameter Learning for Image Registration. - Andrew Hoopes; Malte Hoffmann; Bruce Fischl; John V. Guttag; Adrian V. Dalca (IPMI, 2021)

Learning Mri Contrast-Agnostic Registration. - Malte Hoffmann; Benjamin Billot; Juan Eugenio Iglesias; Bruce Fischl; Adrian V. Dalca (ISBI, 2021)

Conductance-Based Structural Brain Connectivity in Aging and Dementia. - Aina Frau-Pascual; Jean Augustinack; Divya Varadarajan; Anastasia Yendiki; David H. Salat; Bruce Fischl; Iman Aganj (Brain Connect., 2021)

Unsupervised learning of MRI tissue properties using MRI physics models. - Divya Varadarajan; Katherine L. Bouman; André J. W. van der Kouwe; Bruce Fischl; Adrian V. Dalca (CoRR, 2021)

SynthSeg: Domain Randomisation for Segmentation of Brain MRI Scans of any Contrast and Resolution. - Benjamin Billot; Douglas N. Greve; Oula Puonti; Axel Thielscher; Koen Van Leemput; Bruce Fischl; Adrian V. Dalca; Juan Eugenio Iglesias (CoRR, 2021)

A deep learning toolbox for automatic segmentation of subcortical limbic structures from MRI images. - Douglas N. Greve; Benjamin Billot; Devani Cordero; Andrew Hoopes; Malte Hoffmann; Adrian V. Dalca; Bruce Fischl; Juan Eugenio Iglesias; Jean C. Augustinack (NeuroImage, 2021)

Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast. - Juan Eugenio Iglesias; Benjamin Billot; Yaël Balbastre; Azadeh Tabari; John Conklin; R. Gilberto González; Daniel C. Alexander; Polina Golland; Brian L. Edlow; Bruce Fischl (NeuroImage, 2021)

High-fidelity approximation of grid- and shell-based sampling schemes from undersampled DSI using compressed sensing: Post mortem validation. - Robert Jones; Chiara Maffei; Jean Augustinack; Bruce Fischl; Hui Wang 060; Berkin Bilgic; Anastasia Yendiki (NeuroImage, 2021)

Mapping the subcortical connectivity of the human default mode network. - Jian Li 033; William H. Curley; Bastien Guérin; Darin D. Dougherty; Adrian V. Dalca; Bruce Fischl; Andreas Horn; Brian L. Edlow (NeuroImage, 2021)

Quantification of volumetric morphometry and optical property in the cortex of human cerebellum at micrometer resolution. - Chao J. Liu; William Ammon; Viviana Siless; Morgan Fogarty; Ruopeng Wang; Alessia Atzeni; Iman Aganj; Juan Eugenio Iglesias; Lilla Zöllei; Bruce Fischl; Jeremy D. Schmahmann; Hui Wang 060 (NeuroImage, 2021)

Reliability and sensitivity of two whole-brain segmentation approaches included in FreeSurfer - ASEG and SAMSEG. - Donatas Sederevicius; Dídac Vidal-Piñeiro; Øystein Sørensen; Koenraad Van Leemput; Juan Eugenio Iglesias; Adrian V. Dalca; Douglas N. Greve; Bruce Fischl; Atle Bjørnerud; Kristine B. Walhovd; Anders M. Fjell (NeuroImage, 2021)

Multi-Atlas Image Soft Segmentation via Computation of the Expected Label Value. - Iman Aganj; Bruce Fischl (IEEE Trans. Medical Imaging, 2021)

Broca's Area Light-Sheet Microscopy. - Giacomo Mazzamuto; Irene Costantini; Vladislav Gavryusev; Filippo Maria Castelli; Luca Pesce; Marina Scardigli; Matteo Roffilli; Ludovico Silvestri; Francesco Saverio Pavone; Patrick Hof; David A. Boas; Jiarui Yang; et al. (Zenodo, 2021)

Broca's Area Light-Sheet Microscopy. - Giacomo Mazzamuto; Irene Costantini; Vladislav Gavryusev; Filippo Maria Castelli; Luca Pesce; Marina Scardigli; Matteo Roffilli; Ludovico Silvestri; Francesco Saverio Pavone; Patrick Hof; David A. Boas; Jiarui Yang; et al. (Zenodo, 2021)

Broca's Area Light-Sheet Microscopy. - Giacomo Mazzamuto; Irene Costantini; Vladislav Gavryusev; Filippo Maria Castelli; Luca Pesce; Marina Scardigli; Matteo Roffilli; Ludovico Silvestri; Francesco Saverio Pavone; Patrick Hof; David A. Boas; Jiarui Yang; et al. (Zenodo, 2021)

Broca's Area Light-Sheet Microscopy. - Giacomo Mazzamuto; Irene Costantini; Vladislav Gavryusev; Filippo Maria Castelli; Luca Pesce; Marina Scardigli; Matteo Roffilli; Ludovico Silvestri; Francesco Saverio Pavone; Patrick Hof; David A. Boas; Jiarui Yang; et al. (Zenodo, 2021)

TopoFit: Rapid Reconstruction of Topologically-Correct Cortical Surfaces. - Andrew Hoopes; Juan Eugenio Iglesias; Bruce Fischl; Douglas N. Greve; Adrian V. Dalca (MIDL, 2022)

SuperWarp: Supervised Learning and Warping on U-Net for Invariant Subvoxel-Precise Registration. - Sean I. Young; Yaël Balbastre; Adrian V. Dalca; William M. Wells III; Juan Eugenio Iglesias; Bruce Fischl (WBIR, 2022)

SUD: Supervision by Denoising for Medical Image Segmentation. - Sean I. Young; Adrian V. Dalca; Enzo Ferrante; Polina Golland; Bruce Fischl; Juan Eugenio Iglesias (CoRR, 2022)

Learning the Effect of Registration Hyperparameters with HyperMorph. - Andrew Hoopes; Malte Hoffmann; Douglas N. Greve; Bruce Fischl; John V. Guttag; Adrian V. Dalca (CoRR, 2022)

Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas. - Adrià Casamitjana; Marco Lorenzi; Sebastiano Ferraris; Loïc Peter; Marc Modat; Allison Stevens; Bruce Fischl; Tom Vercauteren; Juan Eugenio Iglesias (Medical Image Anal., 2022)

SynthStrip: skull-stripping for any brain image. - Andrew Hoopes; Jocelyn S. Mora; Adrian V. Dalca; Bruce Fischl; Malte Hoffmann (NeuroImage, 2022)

A novel algorithm for multiplicative speckle noise reduction in ex vivo human brain OCT images. - Divya Varadarajan; Caroline Magnain; Morgan Fogarty; David A. Boas; Bruce Fischl; Hui Wang 060 (NeuroImage, 2022)

Volumetric Characterization of Microvasculature in Ex Vivo Human Brain Samples By Serial Sectioning Optical Coherence Tomography. - Jiarui Yang; Shuaibin Chang; Ichun Anderson Chen; Sreekanth Kura; Grace A. Rosen; Nicole A. Saltiel; Bertrand R. Huber; Divya Varadarajan; Yaël Balbastre; Caroline Magnain; Shih-Chi Chen; Bruce Fischl; et al. (IEEE Trans. Biomed. Eng., 2022)

SynthMorph: Learning Contrast-Invariant Registration Without Acquired Images. - Malte Hoffmann; Benjamin Billot; Douglas N. Greve; Juan Eugenio Iglesias; Bruce Fischl; Adrian V. Dalca (IEEE Trans. Medical Imaging, 2022)

Intermediate Deformable Image Registration Via Windowed Cross-Correlation. - Iman Aganj; Bruce Fischl (ISBI, 2023)

Multi-head Graph Convolutional Network for Structural Connectome Classification. - Anees Kazi; Jocelyn S. Mora; Bruce Fischl; Adrian V. Dalca; Iman Aganj (GRAIL/OCELOT@MICCAI, 2023)

Joint cortical registration of geometry and function using semi-supervised learning. - Jian Li 033; Greta Tuckute; Evelina Fedorenko; Brian L. Edlow; Bruce Fischl; Adrian V. Dalca (MIDL, 2023)

Data Consistent Deep Rigid MRI Motion Correction. - Nalini M. Singh; Neel Dey; Malte Hoffmann; Bruce Fischl; Elfar Adalsteinsson; Robert Frost; Adrian V. Dalca; Polina Golland (MIDL, 2023)

Anatomy-specific acquisition-agnostic affine registration learned from fictitious images. - Malte Hoffmann; Andrew Hoopes; Bruce Fischl; Adrian V. Dalca (Image Processing, 2023)

Anatomy-aware and acquisition-agnostic joint registration with SynthMorph. - Malte Hoffmann; Andrew Hoopes; Douglas N. Greve; Bruce Fischl; Adrian V. Dalca (CoRR, 2023)

SynthSeg: Segmentation of brain MRI scans of any contrast and resolution without retraining. - Benjamin Billot; Douglas N. Greve; Oula Puonti; Axel Thielscher; Koen Van Leemput; Bruce Fischl; Adrian V. Dalca; Juan Eugenio Iglesias (Medical Image Anal., 2023)

Fully Convolutional Slice-to-Volume Reconstruction for Single-Stack MRI. - Sean I. Young; Yaël Balbastre; Bruce Fischl; Polina Golland; Juan Eugenio Iglesias (CVPR, 2024)

Boosting Skull-Stripping Performance for Pediatric Brain Images. - William Kelley; Nathan Ngo; Adrian V. Dalca; Bruce Fischl; Lilla Zöllei; Malte Hoffmann (ISBI, 2024)

A label-free and data-free training strategy for vasculature segmentation in serial sectioning OCT data. - Etienne Chollet; Yaël Balbastre; Caroline Magnain; Bruce Fischl; Hui Wang 060 (CoRR, 2024)

Neurovascular Segmentation in sOCT with Deep Learning and Synthetic Training Data. - Etienne Chollet; Yaël Balbastre; Chiara Mauri; Caroline Magnain; Bruce Fischl; Hui Wang 060 (CoRR, 2024)

Learn2Synth: Learning Optimal Data Synthesis Using Hypergradients. - Xiaoling Hu 002; Oula Puonti; Juan Eugenio Iglesias; Bruce Fischl; Yaël Balbastre (CoRR, 2024)

JOSA: Joint surface-based registration and atlas construction of brain geometry and function. - Jian Li 033; Greta Tuckute; Evelina Fedorenko; Brian L. Edlow; Adrian V. Dalca; Bruce Fischl (Medical Image Anal., 2024)

MultiMorph: On-demand Atlas Construction. - S. Mazdak Abulnaga; Andrew Hoopes; Neel Dey; Malte Hoffmann; Bruce Fischl; John V. Guttag; Adrian V. Dalca (CVPR, 2025)

Learning Accurate Rigid Registration for Longitudinal Brain MRI from Synthetic Data. - Jingru Fu; Adrian V. Dalca; Bruce Fischl; Rodrigo Moreno; Malte Hoffmann (ISBI, 2025)

MultiMorph: On-demand Atlas Construction. - S. Mazdak Abulnaga; Andrew Hoopes; Neel Dey; Malte Hoffmann; Marianne Rakic; Bruce Fischl; John V. Guttag; Adrian V. Dalca (CoRR, 2025)

Supervision by Denoising. - Sean I. Young; Adrian V. Dalca; Enzo Ferrante; Polina Golland; Christopher A. Metzler; Bruce Fischl; Juan Eugenio Iglesias (IEEE Trans. Pattern Anal. Mach. Intell., 2025)