Exploiting Physical Parallelism Using Supercomputers: Two Examples from Chemical Physics. - Anders Wallqvist; Bruce J. Berne; Chani Pangali (Computer, 1987)

Molecular Dynamics in Systems with Multiple Time Scales: Reference System Propagator Algorithms. - Bruce J. Berne (Computational Molecular Dynamics, 1999)

Blue Gene: A vision for protein science using a petaflop supercomputer. - Frances E. Allen; George S. Almási; Wanda Andreoni; Daniel K. Beece; Bruce J. Berne; Arthur A. Bright; José R. Brunheroto; Calin Cascaval; José G. Castaños; Paul Coteus; Paul Crumley; Alessandro Curioni; et al. (IBM Syst. J., 2001)

Development of a polarizable force field for proteins via ab initio quantum chemistry: First generation model and gas phase tests. - George A. Kaminski; Harry A. Stern; Bruce J. Berne; Richard A. Friesner; Yixiang X. Cao; Robert B. Murphy; Ruhong Zhou; Thomas A. Halgren (J. Comput. Chem., 2002)

Integrated Modeling Program, Applied Chemical Theory (IMPACT). - Jay L. Banks; Hege S. Beard; Yixiang X. Cao; Art E. Cho; Wolfgang Damm; Ramy Farid; Anthony K. Felts; Thomas A. Halgren; Daniel T. Mainz; Jon R. Maple; Robert B. Murphy; Dean M. Philipp; et al. (J. Comput. Chem., 2005)

Importance of accurate charges in molecular docking: Quantum mechanical/molecular mechanical (QM/MM) approach. - Art E. Cho; Victor Guallar; Bruce J. Berne; Richard A. Friesner (J. Comput. Chem., 2005)

Massively parallel molecular dynamics simulations of lysozyme unfolding. - Ruhong Zhou; Maria Eleftheriou; Chung-Chau Hon; Robert S. Germain; Ajay K. Royyuru; Bruce J. Berne (IBM J. Res. Dev., 2008)