Machine learning-assisted directed protein evolution with combinatorial libraries. - Zachary Wu; S. B. Jennifer Kan; Russell D. Lewis; Bruce J. Wittmann; Frances H. Arnold (Proc. Natl. Acad. Sci. USA, 2019)

FLIP: Benchmark tasks in fitness landscape inference for proteins. - Christian Dallago; Jody Mou; Kadina E. Johnston; Bruce J. Wittmann; Nicholas Bhattacharya; Samuel Goldman; Ali Madani; Kevin K. Yang (NeurIPS Datasets and Benchmarks, 2021)

CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes. - Jason Yang; Ariane Mora; Shengchao Liu; Bruce J. Wittmann; Animashree Anandkumar; Frances H. Arnold; Yisong Yue (NeurIPS, 2024)

Steering Generative Models with Experimental Data for Protein Fitness Optimization. - Jason Yang; Wenda Chu; Daniel Khalil; Raul Astudillo; Bruce J. Wittmann; Frances H. Arnold; Yisong Yue (CoRR, 2025)