NeuroPred: a tool to predict cleavage sites in neuropeptide precursors and provide the masses of the resulting peptides. - Bruce R. Southey; Andinet Amare; Tyler A. Zimmerman; Sandra L. Rodriguez-Zas; Jonathan V. Sweedler (Nucleic Acids Res., 2006)

Smoothing Spline Mixed Effects Modeling of Multifactorial Gene Expression Profiles. - Brandon J. Smith; Bruce R. Southey; Sandra L. Rodriguez-Zas (BIBM, 2007)

Enhanced Prediction of Cleavage in Bovine Precursor Sequences. - Allison N. Tegge; Sandra L. Rodriguez-Zas; Jonathan V. Sweedler; Bruce R. Southey (ISBRA, 2007)

Prediction of neuropeptide cleavage sites in insects. - Bruce R. Southey; Jonathan V. Sweedler; Sandra L. Rodriguez-Zas (Bioinform., 2008)

A Python analytical pipeline to identify prohormone precursors and predict prohormone cleavage sites. - Bruce R. Southey; Jonathan V. Sweedler; Sandra L. Rodriguez-Zas (Frontiers Neuroinformatics, 2008)

Comparison of tandem mass spectrometry search methods to identify neuropeptides. - Malik N. Akhtar; Bruce R. Southey; Kenneth I. Porter; Jonathan V. Sweedler; Sandra L. Rodriguez-Zas (BIBM Workshops, 2011)

Model of ion intensity from tandem mass spectra for improved peptide identification and simulation. - Zeeshan Fazal; Bruce R. Southey; Ahmed Sadeque; Jonathan V. Sweedler; Sandra L. Rodriguez-Zas (BIBM Workshops, 2011)

Integration of sequence and functional information to identify and annotate neuropeptides in the pig genome. - Kenneth I. Porter; Bruce R. Southey; Malik N. Akhtar; Jonathan V. Sweedler; Sandra L. Rodriguez-Zas (BIBM Workshops, 2011)

Hierarchical modeling of alternative exon usage associations with survival. - Ahmed Sadeque; Nicola V. L. Serao; Bruce R. Southey; Zeeshan Fazal; Sandra L. Rodriguez-Zas (BIBM Workshops, 2011)

Identification of best indicators of peptide-spectrum match using a permutation resampling approach. - Malik N. Akhtar; Bruce R. Southey; Per E. Andrén; Jonathan V. Sweedler; Sandra L. Rodriguez-Zas (J. Bioinform. Comput. Biol., 2014)