On motion planning with six degrees of freedom: Solving the intersection problems in configuration space. - Bruce Randall Donald (ICRA, 1985)

Robot motion planning with uncertainty in the geometric models of the robot and environment: A formal framework for error detection and recovery. - Bruce Randall Donald (ICRA, 1986)

A Search Algorithm for Motion Planning with Six Degrees of Freedom. - Bruce Randall Donald (Artif. Intell., 1987)

On the Complexity of Kinodynamic Planning - John F. Canny; Bruce Randall Donald; John H. Reif; Patrick G. Xavier (FOCS, 1988)

Planning multistep error detection and recovery strategies. - Bruce Randall Donald (ICRA, 1988)

A Geometric Approach to Error Detection and Recovery for Robot Motion Planning with Uncertainty. - Bruce Randall Donald (Artif. Intell., 1988)

Simplified Voronoi Diagrams. - John F. Canny; Bruce Randall Donald (Discret. Comput. Geom., 1988)

Error Detection and Recovery in Robotics - Bruce Randall Donald (Springer, 1989)

A provably good approximation algorithm for optimal-time trajectory planning. - Bruce Randall Donald; Patrick G. Xavier (ICRA, 1989)

Towards experimental verification of an automated compliant motion planner based on a geometric theory of error detection and recovery. - James S. Jennings; Bruce Randall Donald; Doug Campbell (ICRA, 1989)

Simplified Voronoi Diagrams. - John F. Canny; Bruce Randall Donald (Autonomous Robot Vehicles, 1990)

On the motion of compliantly-connected rigid bodies in contact. II. A system for analyzing designs for assembly. - Bruce Randall Donald; Dinesh K. Pai (ICRA, 1990)

Real-time robot motion planning using rasterizing computer graphics hardware. - Jed Lengyel; Mark Reichert; Bruce Randall Donald; Donald P. Greenberg (SIGGRAPH, 1990)

The Complexity of Planar Compliant Motion Planning Under Uncertainty. - Bruce Randall Donald (Algorithmica, 1990)

Planning Multi-Step Error Detection and Recovery Strategies. - Bruce Randall Donald (Int. J. Robotics Res., 1990)

On the Complexity of Computing the Homology Type of a Triangulation - Bruce Randall Donald; Davied Renpan Chang (FOCS, 1991)

Sensor interpretation and task-directed planning using perceptual equivalence classes. - Bruce Randall Donald; Jim Jennings (ICRA, 1991)

Time-safety trade-offs and a bang-bang algorithm for kinodynamic planning. - Bruce Randall Donald; Patrick G. Xavier (ICRA, 1991)

Perceptual limits, perceptual equivalence classes, and a robot's sensori-computational capabilities (extended abstract). - Bruce Randall Donald; James S. Jennings (IROS, 1991)

A Rational Rotation Method for Robust Geometric Algorithms. - John F. Canny; Bruce Randall Donald; Eugene K. Ressler (SCG, 1992)

Constructive recognizability for task-directed robot programming. - Bruce Randall Donald; James S. Jennings (ICRA, 1992)

Program mobile robots in Scheme. - Jonathan Rees; Bruce Randall Donald (ICRA, 1992)

Constructive recognizability for task-directed robot programming. - Bruce Randall Donald; James S. Jennings; Russell G. Brown (Robotics Auton. Syst., 1992)

Information Invariants in Robotics: Part I - State, Communication, and Side-Effects. - Bruce Randall Donald (ICRA (3), 1993)

Information Invariants in Robotics: Part II - Sensors and Computation. - Bruce Randall Donald (ICRA (3), 1993)

Special Issue on Computational Robotics: The Geometric Theory of Manipulation, Planning, and Control. - Bruce Randall Donald (Algorithmica, 1993)

The Motion of Planar, Compliantly Connected Rigid Bodies in Contact, With Applications to Automatic Fastening. - Bruce Randall Donald; Dinesh K. Pai (Int. J. Robotics Res., 1993)

Kinodynamic Motion Planning. - Bruce Randall Donald; Patrick G. Xavier; John F. Canny; John H. Reif (J. ACM, 1993)

Sensorless Manipulation Using Massively Parallel Microfabricated Actuator Arrays. - Karl-Friedrich Böhringer; Bruce Randall Donald; Robert Mihailovich; Noel C. MacDonald (ICRA, 1994)

Automatic Sensor Configuration for Task-Directed Planning. - Amy J. Briggs; Bruce Randall Donald (ICRA, 1994)

Analyzing Teams of Cooperating Mobile Robots. - Bruce Randall Donald; James S. Jennings; Daniela Rus (ICRA, 1994)

Moving furniture with teams of autonomous robots. - Daniela Rus; Bruce Randall Donald; Jim Jennings (IROS (1), 1995)

Distributed Robotic Manipulation: Experiments in Minimalism. - Karl-Friedrich Böhringer; Russell G. Brown; Bruce Randall Donald; James S. Jennings; Daniela Rus (ISER, 1995)

On Information Invariants in Robotics. - Bruce Randall Donald (Artif. Intell., 1995)

Provably Good Approximation Algorithms for Optimal Kinodynamic Planning: Robots with Decoupled Dynamics Bounds. - Bruce Randall Donald; Patrick G. Xavier (Algorithmica, 1995)

Provably Good Approximation Algorithms for Optimal Kinodynamic Planning for Cartesian Robots and Open-Chain Manipulators. - Bruce Randall Donald; Patrick G. Xavier (Algorithmica, 1995)

What programmable vector fields can (and cannot) do: force field algorithms for MEMS and vibratory plate parts feeders. - Karl-Friedrich Böhringer; Bruce Randall Donald; Noel C. MacDonald (ICRA, 1996)

The Area Bisectors of a Polygon and Force Equilibria in Programmable Vector Fields. - Karl-Friedrich Böhringer; Bruce Randall Donald; Dan Halperin (SCG, 1997)

Vector fields for task-level distributed manipulation: experiments with organic micro actuator arrays. - Karl-Friedrich Böhringer; John W. Suh; Bruce Randall Donald; Gregory T. A. Kovacs (ICRA, 1997)

Information Invariants for Distributed Manipulation. - Bruce Randall Donald; James S. Jennings; Daniela Rus (Int. J. Robotics Res., 1997)

Minimalism Distribution Supermodularity. - Bruce Randall Donald; James S. Jennings; Daniela Rus (J. Exp. Theor. Artif. Intell., 1997)

Experiments in Constrained Prehensile Manipulation: Distributed Manipulation with Ropes. - Bruce Randall Donald; Larry Gariepy; Daniela Rus (ISER, 1999)

On the Area Bisectors of a Polygon. - Karl-Friedrich Böhringer; Bruce Randall Donald; Dan Halperin (Discret. Comput. Geom., 1999)

Programmable Force Fields for Distributed Manipulation, with Applications to MEMS Actuator Arrays and Vibratory Parts Feeders. - Karl-Friedrich Böhringer; Bruce Randall Donald; Noel C. MacDonald (Int. J. Robotics Res., 1999)

Distributed Manipulation of Multiple Objects using Ropes. - Bruce Randall Donald; Larry Gariepy; Daniela Rus (ICRA, 2000)

Using Haptic Vector Fields for Animation Motion Control. - Bruce Randall Donald; Frederick Henle (ICRA, 2000)

Practical Mobile Robot Self-Localization. - Jon Howell; Bruce Randall Donald (ICRA, 2000)

Fully Programmable MEMS Ciliary Actuator Arrays for Micromanipulation Tasks. - John W. Suh; R. Bruce Darling; Karl-Friedrich Böhringer; Bruce Randall Donald; Henry Baltes; Gregory T. A. Kovacs (ICRA, 2000)

Accessible animation and customizable graphics via simplicial configuration modeling. - Tom Ngo; Doug Cutrell; Jenny Dana; Bruce Randall Donald; Lorie Loeb; Shunhui Zhu (SIGGRAPH, 2000)

Algorithms for Sensorless Manipulation Using a Vibrating Surface. - Karl-Friedrich Böhringer; Vivek Bhatt; Bruce Randall Donald; Kenneth Y. Goldberg (Algorithmica, 2000)

Visibility-Based Planning of Sensor Control Strategies. - Amy J. Briggs; Bruce Randall Donald (Algorithmica, 2000)

Mobile Robot Self-Localization without Explicit Landmarks. - Russell G. Brown; Bruce Randall Donald (Algorithmica, 2000)

The NOESY Jigsaw: Automated Protein Secondary Structure and Main-Chain Assignment from Sparse, Unassigned NMR Data. - Christopher Bailey-Kellogg; Alik Widge; John J. Kelley 001; Marcelo J. Berardi; John H. Bushweller; Bruce Randall Donald (J. Comput. Biol., 2000)

Part orientation with one or two stable equilibria using programmable force fields. - Karl-Friedrich Böhringer; Bruce Randall Donald; Lydia E. Kavraki; Florent Lamiraux (IEEE Trans. Robotics Autom., 2000)

Physical Geometric Algorithms for Structural Molecular Biology. - Bruce Randall Donald; Christopher Bailey-Kellogg; Jack Kelley; Ryan H. Lilien (ICRA, 2001)

Extracting structural information using time-frequency analysis of protein NMR data. - Christopher James Langmead; Bruce Randall Donald (RECOMB, 2001)

Reducing Mass Degeneracy in SAR by MS by Stable Isotopic Labeling. - Christopher Bailey-Kellogg; John J. Kelley 001; Clifford Stein 001; Bruce Randall Donald (J. Comput. Biol., 2001)

A Maximum Entropy Algorithm for Rhythmic Analysis of Genome-Wide Expression Patterns. - Christopher James Langmead; C. Robertson McClung; Bruce Randall Donald (CSB, 2002)

Guest Editors' Introduction to the Special Issue on Algorithmic Foundations of Robotics. - Bruce Randall Donald; Kevin M. Lynch; Daniela Rus (Int. J. Robotics Res., 2002)

3D Structural Homology Detection via Unassigned Residual Dipolar Couplings. - Christopher James Langmead; Bruce Randall Donald (CSB, 2003)

An Exact Algorithm For Determining Protein Backbone Structure From NH Residual Dipolar Couplings. - Lincong Wang; Ramgopal R. Mettu; Ryan H. Lilien; Bruce Randall Donald (CSB, 2003)

UntetheredMicro-Actuators for Autonomous Micro-robot Locomotion: Design, Fabrication, Control, and Performance. - Bruce Randall Donald; Christopher G. Levey; Craig D. McGray; Daniela Rus; Mike Sinclair (ISRR, 2003)

Large a polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments. - Christopher James Langmead; Anthony K. Yan; Ryan H. Lilien; Lincong Wang; Bruce Randall Donald (RECOMB, 2003)

Phase-Independent Rhythmic Analysis of Genome-Wide Expression Patterns. - Christopher James Langmead; Anthony K. Yan; C. Robertson McClung; Bruce Randall Donald (J. Comput. Biol., 2003)

Probabilistic Disease Classification of Expression-Dependent Proteomic Data from Mass Spectrometry of Human Serum. - Ryan H. Lilien; Hany Farid; Bruce Randall Donald (J. Comput. Biol., 2003)

High-Throughput 3D Structural Homology Detection via NMR Resonance Assignment. - Christopher James Langmead; Bruce Randall Donald (CSB, 2004)

Analysis of a Systematic Search-Based Algorithm for Determining Protein Backbone Structure from a Minimum Number of Residual Dipolar Couplings. - Lincong Wang; Bruce Randall Donald (CSB, 2004)

Algorithmic Challenges in Structural Molecular Biology and Proteomics. - Bruce Randall Donald (WAFR, 2004)

A Polynomial-Time Nuclear Vector Replacement Algorithm for Automated NMR Resonance Assignments. - Christopher James Langmead; Anthony K. Yan; Ryan H. Lilien; Lincong Wang; Bruce Randall Donald (J. Comput. Biol., 2004)

An Efficient and Accurate Algorithm for Assigning Nuclear Overhauser Effect Restraints Using a Rotamer Library Ensemble and Residual Dipolar Couplings. - Lincong Wang; Bruce Randall Donald (CSB, 2005)

An Algebraic Geometry Approach to Protein Structure Determination from NMR Data. - Lincong Wang; Ramgopal R. Mettu; Bruce Randall Donald (CSB, 2005)

High-throughput inference of protein-protein interfaces from unassigned NMR data. - Ramgopal R. Mettu; Ryan H. Lilien; Bruce Randall Donald (ISMB (Supplement of Bioinformatics), 2005)

A Steerable, Untethered, 250 × 60µm MEMS Mobile Micro-Robot. - Bruce Randall Donald; Christopher G. Levey; Craig D. McGray; Igor Paprotny; Daniela Rus (ISRR, 2005)

Computational and physical modeling challenges in structural molecular biology and proteomics. - Bruce Randall Donald (Symposium on Solid and Physical Modeling, 2005)

A Probability-Based Similarity Measure for Saupe Alignment Tensors with Applications to Residual Dipolar Couplings in NMR Structural Biology. - Anthony K. Yan; Christopher James Langmead; Bruce Randall Donald (Int. J. Robotics Res., 2005)

A Novel Ensemble-Based Scoring and Search Algorithm for Protein Redesign and Its Application to Modify the Substrate Specificity of the Gramicidin Synthetase A Phenylalanine Adenylation Enzyme. - Ryan H. Lilien; Brian W. Stevens; Amy C. Anderson; Bruce Randall Donald (J. Comput. Biol., 2005)

Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design. - Ivelin Georgiev; Ryan H. Lilien; Bruce Randall Donald (ISMB (Supplement of Bioinformatics), 2006)

A Novel Minimized Dead-End Elimination Criterion and Its Application to Protein Redesign in a Hybrid Scoring and Search Algorithm for Computing Partition Functions over Molecular Ensembles. - Ivelin Georgiev; Ryan H. Lilien; Bruce Randall Donald (RECOMB, 2006)

Extended Abstract: Structure Determination of Symmetric Protein Complexes by a Complete Search of Symmetry Configuration Space Using NMR Distance Restraints. - Shobha Potluri; Anthony K. Yan; James J. Chou; Bruce Randall Donald; Chris Bailey-Kellogg (WAFR, 2006)

A Polynomial-Time Algorithm for De Novo Protein Backbone Structure Determination from Nuclear Magnetic Resonance Data. - Lincong Wang; Ramgopal R. Mettu; Bruce Randall Donald (J. Comput. Biol., 2006)

Dead-End Elimination with Backbone Flexibility. - Ivelin Georgiev; Bruce Randall Donald (ISMB/ECCB (Supplement of Bioinformatics), 2007)

Algorithm for backrub motions in protein design. - Ivelin Georgiev; Daniel A. Keedy; Jane S. Richardson; David C. Richardson; Bruce Randall Donald (ISMB, 2008)

Simultaneous Control of Multiple MEMS Microrobots. - Bruce Randall Donald; Christopher G. Levey; Igor Paprotny; Daniela Rus (WAFR, 2008)

The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles. - Ivelin Georgiev; Ryan H. Lilien; Bruce Randall Donald (J. Comput. Chem., 2008)

Developing a Scoring Function for NMR Structure-based Assignments using Machine Learning. - Mehmet Çagri Çalpur; Hakan Erdogan; Bülent Çatay; Bruce Randall Donald; Mehmet Serkan Apaydin (ISCIS, 2010)

A Markov Random Field Framework for Protein Side-Chain Resonance Assignment. - Jianyang Zeng 001; Pei Zhou 001; Bruce Randall Donald (RECOMB, 2010)

Algorithms and Analytic Solutions Using Sparse Residual Dipolar Couplings for High-Resolution Automated Protein Backbone Structure Determination by NMR. - Anna Yershova; Chittaranjan Tripathy; Pei Zhou 001; Bruce Randall Donald (WAFR, 2010)

Design of Protein-Protein Interactions with a Novel Ensemble-Based Scoring Algorithm. - Kyle E. Roberts; Patrick R. Cushing; Prisca Boisguerin; Dean R. Madden; Bruce Randall Donald (RECOMB, 2011)

Protein Loop Closure Using Orientational Restraints from NMR Data. - Chittaranjan Tripathy; Jianyang Zeng 001; Pei Zhou 001; Bruce Randall Donald (RECOMB, 2011)

NVR-BIP: Nuclear Vector Replacement using Binary Integer Programming for NMR Structure-Based Assignments. - Mehmet Serkan Apaydin; Bülent Çatay; Nicholas Patrick; Bruce Randall Donald (Comput. J., 2011)

NMR Structural Inference of Symmetric Homo-Oligomers. - Himanshu Chandola; Anthony K. Yan; Shobha Potluri; Bruce Randall Donald; Chris Bailey-Kellogg (J. Comput. Biol., 2011)

A Geometric Arrangement Algorithm for Structure Determination of Symmetric Protein Homo-Oligomers from NOEs and RDCs. - Jeffrey W. Martin; Anthony K. Yan; Chris Bailey-Kellogg; Pei Zhou 001; Bruce Randall Donald (J. Comput. Biol., 2011)

A Bayesian Approach for Determining Protein Side-Chain Rotamer Conformations Using Unassigned NOE Data. - Jianyang Zeng 001; Kyle E. Roberts; Pei Zhou 001; Bruce Randall Donald (J. Comput. Biol., 2011)

The Compass That Steered Robotics. - Bruce Randall Donald (Logic and Program Semantics, 2012)

Turning-rate Selective Control : A New Method for Independent Control of Stress-engineered MEMS Microrobots. - Igor Paprotny; Christopher G. Levey; Paul Wright; Bruce Randall Donald (Robotics: Science and Systems, 2012)

Protein Design Using Continuous Rotamers. - Pablo Gainza; Kyle E. Roberts; Bruce Randall Donald (PLoS Comput. Biol., 2012)

The Role of Local Backrub Motions in Evolved and Designed Mutations. - Daniel A. Keedy; Ivelin Georgiev; Edward B. Triplett; Bruce Randall Donald; David C. Richardson; Jane S. Richardson (PLoS Comput. Biol., 2012)

Computational Design of a PDZ Domain Peptide Inhibitor that Rescues CFTR Activity. - Kyle E. Roberts; Patrick R. Cushing; Prisca Boisguerin; Dean R. Madden; Bruce Randall Donald (PLoS Comput. Biol., 2012)

Simultaneous determination of subunit and complex structures of symmetric homo-oligomers from ambiguous NMR data. - Himanshu Chandola; Bruce Randall Donald; Chris Bailey-Kellogg (BCB, 2013)

MicroStressBots: Species Differentiation in Surface Micromachined Microrobots. - Christopher G. Levey; Igor Paprotny; Bruce Randall Donald (SSR@ICRA, 2013)

Extracting Structural Information from Residual Chemical Shift Anisotropy: Analytic Solutions for Peptide Plane Orientations and Applications to Determine Protein Structure. - Chittaranjan Tripathy; Anthony K. Yan; Pei Zhou 001; Bruce Randall Donald (RECOMB, 2013)

Planning and control for microassembly of structures composed of stress-engineered MEMS microrobots. - Bruce Randall Donald; Christopher G. Levey; Igor Paprotny; Daniela Rus (Int. J. Robotics Res., 2013)

An efficient parallel algorithm for accelerating computational protein design. - Yichao Zhou; Wei Xu 005; Bruce Randall Donald; Jianyang Zeng 001 (Bioinform., 2014)

Comets (Constrained Optimization of Multistate Energies by Tree Search): A Provable and Efficient Algorithm to Optimize Binding Affinity and Specificity with Respect to Sequence. - Mark Hallen; Bruce Randall Donald (RECOMB, 2015)

comets (Constrained Optimization of Multistate Energies by Tree Search): A Provable and Efficient Protein Design Algorithm to Optimize Binding Affinity and Specificity with Respect to Sequence. - Mark A. Hallen; Bruce Randall Donald (J. Comput. Biol., 2016)

BWM*: A Novel, Provable, Ensemble-based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design. - Jonathan D. Jou; Swati Jain; Ivelin Georgiev; Bruce Randall Donald (J. Comput. Biol., 2016)

cOSPREY: A Cloud-Based Distributed Algorithm for Large-Scale Computational Protein Design. - Yuchao Pan; Yuxi Dong; Jingtian Zhou; Mark Hallen; Bruce Randall Donald; Jianyang Zeng 001; Wei Xu 005 (J. Comput. Biol., 2016)

Fast search algorithms for computational protein design. - Seydou Traoré; Kyle E. Roberts; David Allouche; Bruce Randall Donald; Isabelle André; Thomas Schiex; Sophie Barbe (J. Comput. Chem., 2016)

BBK* (Branch and Bound over K*): A Provable and Efficient Ensemble-Based Algorithm to Optimize Stability and Binding Affinity over Large Sequence Spaces. - Adegoke A. Ojewole; Jonathan D. Jou; Vance G. Fowler; Bruce Randall Donald (RECOMB, 2017)

CATS (Coordinates of Atoms by Taylor Series): protein design with backbone flexibility in all locally feasible directions. - Mark A. Hallen; Bruce Randall Donald (Bioinform., 2017)

LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid Rotamer-Like Efficiency. - Mark A. Hallen; Jonathan D. Jou; Bruce Randall Donald (J. Comput. Biol., 2017)

A critical analysis of computational protein design with sparse residue interaction graphs. - Swati Jain; Jonathan D. Jou; Ivelin S. Georgiev; Bruce Randall Donald (PLoS Comput. Biol., 2017)

Protein Design by Algorithm. - Mark A. Hallen; Bruce Randall Donald (CoRR, 2018)

BBK* (Branch and Bound Over K*): A Provable and Efficient Ensemble-Based Protein Design Algorithm to Optimize Stability and Binding Affinity Over Large Sequence Spaces. - Adegoke A. Ojewole; Jonathan D. Jou; Vance G. Fowler; Bruce Randall Donald (J. Comput. Biol., 2018)

OSPREY 3.0: Open-source protein redesign for you, with powerful new features. - Mark A. Hallen; Jeffrey W. Martin; Adegoke A. Ojewole; Jonathan D. Jou; Anna U. Lowegard; Marcel S. Frenkel; Pablo Gainza; Hunter M. Nisonoff; Aditya Mukund; Siyu Wang; Graham T. Holt; David Zhou; et al. (J. Comput. Chem., 2018)

Some Geometric and Computational Challenges Arising in Structural Molecular Biology (Invited Talk). - Bruce Randall Donald (SoCG, 2019)

Minimization-Aware Recursive K^* K ∗ ( MARK^* MARK ∗ ): A Novel, Provable Algorithm that Accelerates Ensemble-Based Protein Design and Provably Approximates the Energy Landscape. - Jonathan D. Jou; Graham T. Holt; Anna U. Lowegard; Bruce Randall Donald (RECOMB, 2019)

Protein design by provable algorithms. - Mark A. Hallen; Bruce Randall Donald (Commun. ACM, 2019)

Minimal NMR distance information for rigidity of protein graphs. - Carlile Lavor; Leo Liberti; Bruce Randall Donald; Bradley Worley; Benjamin Bardiaux; Thérèse E. Malliavin; Michael Nilges (Discret. Appl. Math., 2019)

Minimization-Aware Recursive K*: A Novel, Provable Algorithm that Accelerates Ensemble-Based Protein Design and Provably Approximates the Energy Landscape. - Jonathan D. Jou; Graham T. Holt; Anna U. Lowegard; Bruce Randall Donald (J. Comput. Biol., 2020)

Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD: KRas protein-protein interface. - Anna U. Lowegard; Marcel S. Frenkel; Graham T. Holt; Jonathan D. Jou; Adegoke A. Ojewole; Bruce Randall Donald (PLoS Comput. Biol., 2020)

Resistor: An Algorithm for Predicting Resistance Mutations Using Pareto Optimization over Multistate Protein Design and Mutational Signatures. - Nathan Guerin; Teresa Kaserer; Bruce Randall Donald (RECOMB, 2022)

RESISTOR: A New OSPREY Module to Predict Resistance Mutations. - Nathan Guerin; Teresa Kaserer; Bruce Randall Donald (J. Comput. Biol., 2022)

Chiral evasion and stereospecific antifolate resistance in Staphylococcus aureus. - Siyu Wang; Stephanie M. Reeve; Graham T. Holt; Adegoke A. Ojewole; Marcel S. Frenkel; Pablo Gainza; Santosh Keshipeddy; Vance G. Fowler; Dennis L. Wright; Bruce Randall Donald (PLoS Comput. Biol., 2022)

DexDesign: A New OSPREY-Based Algorithm for Designing de novo D-peptide Inhibitors. - Nathan Guerin; Henry Childs; Pei Zhou 001; Bruce Randall Donald (RECOMB, 2024)

Protocol for Designing De Novo Noncanonical Peptide Binders in OSPREY. - Henry Childs; Nathan Guerin; Pei Zhou 001; Bruce Randall Donald (J. Comput. Biol., 2024)