Molecular tetris: crowdsourcing molecular docking using path-planning and haptic devices. - Torin Adamson; John E. G. Baxter; Kasra Manavi; April Suknot; Bruna Jacobson; Patrick Gage Kelley; Lydia Tapia (MIG, 2014)

Extending rule-based methods to model molecular geometry. - Brittany R. Hoard; Bruna Jacobson; Kasra Manavi; Lydia Tapia (BIBM, 2015)

Extending rule-based methods to model molecular geometry and 3D model resolution. - Brittany R. Hoard; Bruna Jacobson; Kasra Manavi; Lydia Tapia (BMC Syst. Biol., 2016)

Influence of model resolution on geometric simulations of antibody aggregation. - Kasra Manavi; Bruna Jacobson; Brittany R. Hoard; Lydia Tapia (Robotica, 2016)

Geometric Sampling Framework for Exploring Molecular Walker Energetics and Dynamics. - Bruna Jacobson; Jon Christian L. David; Mitchell C. Malone; Kasra Manavi; Susan R. Atlas; Lydia Tapia (BCB, 2017)

Optimizing Low Energy Pathways in Receptor-Ligand Binding with Motion Planning. - Torin Adamson; Julian Antolin Camarena; Lydia Tapia; Bruna Jacobson (BIBM, 2019)

A Mobile Game for Crowdsourced Molecular Docking Pathways. - Anna Chavez; Torin Adamson; Lydia Tapia; Bruna Jacobson (MIG, 2019)

An Efficient Voxel-Based Deep Learning Approach for Ligand Binding Site Detection. - Jingbo Liang; Bruna Jacobson (BIBM, 2022)

Player Exploration Patterns in Interactive Molecular Docking with Electrostatic Visual Cues. - Lin Liu; Torin Adamson; Lydia Tapia; Bruna Jacobson (MIG, 2023)

MoDyGAN: Combining Molecular Dynamics With GANs to Investigate Protein Conformational Space. - Jingbo Liang; Bruna Jacobson (CoRR, 2025)