The Phytophthora Genome Initiative Database: informatics and analysis for distributed pathogenomic research. - Mark E. Waugh; Peter T. Hraber; Jennifer W. Weller; Yihe Wu; Guanghong Chen; Jeff T. Inman; Donald Kiphart; Bruno W. S. Sobral (Nucleic Acids Res., 2000)

ISYS: a decentralized, component-based approach to the integration of heterogeneous bioinformatics resources. - Adam C. Siepel; Andrew D. Farmer; Andrew N. Tolopko; Mingzhe Zhuang; Pedro Mendes 001; William D. Beavis; Bruno W. S. Sobral (Bioinform., 2001)

The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. - Eva Huala; Allan Dickerman; Margarita Garcia-Hernandez; Danforth Weems; Leonore Reiser; Frank LaFond; David Hanley; Donald Kiphart; Mingzhe Zhuang; Wen Huang; Lukas A. Mueller; Debika Bhattacharyya; et al. (Nucleic Acids Res., 2001)

A Life Scientist's Gateway to Distributed Data Management and Computing: The PathPort/ToolBus Framework. - J. Dana Eckart; Bruno W. S. Sobral (OMICS, 2003)

ToolBus - An Interoperable Environment for Biological Researchers. - Boyu Yang 001; J. Dana Eckart; Eric K. Nordberg; Bruno W. S. Sobral (METMBS, 2005)

Cyberinfrastructure for PathoSystems Biology. - Bruno W. S. Sobral (BSB, 2005)

PIML: the Pathogen Information Markup Language. - Yongqun He; Richard R. Vines; Alice R. Wattam; Georgiy V. Abramochkin; Allan Dickerman; J. Dana Eckart; Bruno W. S. Sobral (Bioinform., 2005)

NodMutDB: a database for genes and mutants involved in symbiosis. - Chunhong Mao; Jing Qiu; Chunxia Wang; Trevor C. Charles; Bruno W. S. Sobral (Bioinform., 2005)

Bioinformatics Web Services. - Boyu Yang 001; Tian Xue; Jing Zhao; Chaitanya Kommidi; Jeetendra Soneja; Jian Li; Rebecca Will; Bruce Sharp; Ron Kenyon; Oswald Crasta; Bruno W. S. Sobral (BIOCOMP, 2006)

Genome Annotation and Comparison System. - Jing Zhao; Tian Xue; Boyu Yang 001; Kelly Williams; Alice R. Wattam; Rebecca Will; Bruce Sharp; Ron Kenyon; Oswald Crasta; Bruno W. S. Sobral (BIOCOMP, 2006)

A Generalized Framework for Pathosystems Informatics & Bioinformatics Web Services. - Tian Xue; Boyu Yang 001; Rebecca Will; Bruce Sharp; Ron Kenyon; Oswald Crasta; Bruno W. S. Sobral (BIOCOMP, 2007)

Computational prediction of host-pathogen protein-protein interactions. - Matthew D. Dyer; T. M. Murali 001; Bruno W. S. Sobral (ISMB/ECCB (Supplement of Bioinformatics), 2007)

PATRIC: The VBI PathoSystems Resource Integration Center. - E. E. Snyder; N. Kampanya; J. Lu; Eric K. Nordberg; H. R. Karur; Maulik Shukla; Jeetendra Soneja; Y. Tian; Tian Xue; Hyun Seung Yoo; Fengkai Zhang; C. Dharmanolla; et al. (Nucleic Acids Res., 2007)

An emerging cyberinfrastructure for biodefense pathogen and pathogen-host data. - C. Zhang; Oswald Crasta; Stephen A. Cammer; Rebecca Will; Ron Kenyon; Daniel E. Sullivan; Q. Yu; W. Sun; R. Jha; D. Liu; Tian Xue; Y. Zhang; et al. (Nucleic Acids Res., 2008)

A Quantitative Study of the Division Cycle of Caulobacter crescentus Stalked Cells. - Shenghua Li; Paul Brazhnik; Bruno W. S. Sobral; John J. Tyson (PLoS Comput. Biol., 2008)

PIG - the pathogen interaction gateway. - Tim Driscoll; Matthew D. Dyer; T. M. Murali 001; Bruno W. S. Sobral (Nucleic Acids Res., 2009)

Temporal Controls of the Asymmetric Cell Division Cycle in Caulobacter crescentus. - Shenghua Li; Paul Brazhnik; Bruno W. S. Sobral; John J. Tyson (PLoS Comput. Biol., 2009)

Towards Event Extraction from Full Texts on Infectious Diseases. - Sampo Pyysalo; Tomoko Ohta; Han-Cheol Cho; Daniel E. Sullivan; Chunhong Mao; Bruno W. S. Sobral; Jun'ichi Tsujii; Sophia Ananiadou (BioNLP@ACL, 2010)

Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011. - Sampo Pyysalo; Tomoko Ohta; Rafal Rak; Daniel E. Sullivan; Chunhong Mao; Chunxia Wang; Bruno W. S. Sobral; Jun'ichi Tsujii; Sophia Ananiadou (BioNLP@ACL (Shared Task), 2011)

Informatics-driven Infectious Disease Research. - Bruno W. S. Sobral (BIOSTEC, 2011)

Informatics-Driven Infectious Disease Research. - Bruno W. S. Sobral; Chunhong Mao; Maulik Shukla; Daniel E. Sullivan; Chengdong Zhang (BIOSTEC (Selected Papers), 2011)

Integration and visualization of host-pathogen data related to infectious diseases. - Timothy Driscoll; Joseph L. Gabbard; Chunhong Mao; Oral Dalay; Maulik Shukla; Clark C. Freifeld; Anne Gatewood Hoen; John S. Brownstein; Bruno W. S. Sobral (Bioinform., 2011)

Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011. - Sampo Pyysalo; Tomoko Ohta; Rafal Rak; Daniel E. Sullivan; Chunhong Mao; Chunxia Wang; Bruno W. S. Sobral; Jun'ichi Tsujii; Sophia Ananiadou (BMC Bioinform., 2012)

PATRIC, the bacterial bioinformatics database and analysis resource. - Alice R. Wattam; David Abraham; Oral Dalay; Terry Disz; Timothy Driscoll; Joseph L. Gabbard; Joseph J. Gillespie; Roger Gough; Deborah Hix; Ronald W. Kenyon; Dustin Machi; Chunhong Mao; et al. (Nucleic Acids Res., 2014)

Curation, integration and visualization of bacterial virulence factors in PATRIC. - Chunhong Mao; David Abraham; Alice R. Wattam; Meredith J. C. Wilson; Maulik Shukla; Hyun Seung Yoo; Bruno W. S. Sobral (Bioinform., 2015)

RNA-Rocket: an RNA-Seq analysis resource for infectious disease research. - Andrew S. Warren; Cristina Aurrecoechea; Brian P. Brunk; Prerak Desai; Scott J. Emrich; Gloria I. Giraldo-Calderón; Omar S. Harb; Deborah Hix; Daniel Lawson; Dustin Machi; Chunhong Mao; Michael McClelland; et al. (Bioinform., 2015)