The Cell Collective: Toward an open and collaborative approach to systems biology. - Tomás Helikar; Bryan M. Kowal; Sean McClenathan; Mitchell Bruckner; Thaine W. Rowley; Alex Madrahimov; Benjamin Wicks; Manish Shrestha; Kahani Limbu; Jim A. Rogers (BMC Syst. Biol., 2012)

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools. - Claudine Chaouiya; Duncan Bérenguier; Sarah M. Keating; Aurélien Naldi; Martijn P. van Iersel; Nicolas Rodriguez 001; Andreas Dräger; Finja Büchel; Thomas Cokelaer; Bryan M. Kowal; Benjamin Wicks; Emanuel J. V. Gonçalves; et al. (BMC Syst. Biol., 2013)

Programmatic access to logical models in the Cell Collective modeling environment via a REST API. - Bryan M. Kowal; Travis R. Schreier; Joseph T. Dauer; Tomás Helikar (Biosyst., 2016)