ASAP, a systematic annotation package for community analysis of genomes. - Jeremy D. Glasner; Paul Liss; Guy Plunkett III; Aaron E. Darling; Tejasvini Prasad; Michael Rusch; Alexis Byrnes; Michael K. Gilson; Bryan S. Biehl; Frederick R. Blattner; Nicole T. Perna (Nucleic Acids Res., 2003)

Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria. - Jeremy D. Glasner; Guy Plunkett III; Bradley D. Anderson; David J. Baumler; Bryan S. Biehl; Valerie Burland; Eric L. Cabot; Aaron E. Darling; Bob Mau; Eric C. Neeno-Eckwall; David Pot; Yu Qiu; et al. (Nucleic Acids Res., 2008)

Reordering contigs of draft genomes using the Mauve Aligner. - Anna I. Rissman; Bob Mau; Bryan S. Biehl; Aaron E. Darling; Jeremy D. Glasner; Nicole T. Perna (Bioinform., 2009)