Accelerating SARS-CoV-2 low frequency variant calling on ultra deep sequencing datasets. - Bryce Kille; Yunxi Liu; Nicolae Sapoval; Michael Nute; Lawrence Rauchwerger; Nancy M. Amato; Todd J. Treangen (IPDPS Workshops, 2021)

Fast Processing and Querying of 170TB of Genomics Data via a Repeated And Merged BloOm Filter (RAMBO). - Gaurav Gupta; Minghao Yan; Benjamin Coleman; Bryce Kille; Ryan A. Leo Elworth; Tharun Medini; Todd J. Treangen; Anshumali Shrivastava (SIGMOD Conference, 2021)

Minmers are a generalization of minimizers that enable unbiased local Jaccard estimation. - Bryce Kille; Erik Garrison; Todd J. Treangen; Adam M. Phillippy (Bioinform., 2023)

tMHG-Finder: Tree-Guided Maximal Homologous Group Finder for Bacterial Genomes. - Yongze Yin; Bryce Kille; Huw A. Ogilvie; Todd J. Treangen; Luay Nakhleh (RECOMB-CG, 2025)